Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq107 122 2e-22 >seq107 Length=1016152 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| ||||| || || || || | || || || || ||||| || ||||| Sbjct 88911 ATACCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCG 88852 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||| |||||||| || || || |||||||| || | | ||| || |||||| Sbjct 88851 GAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGA 88792 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || || || || ||||||||| ||||| || ||||| || | ||||| || | || Sbjct 88791 GGAATCCCCTCCTTGTCCTGAATC-TTGCTCTTGACATTGTCGATTGTATCACTCGACTC 88733 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || || | || || || || |||||||| Sbjct 88732 GACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || || || || |||| ||| ||||| || || |||||| Sbjct 88650 GTGGATTCCTTCTGGATGTTGTAATCCGAGAGTGTTCGACCATCTTCGAGCTGCTTTCCA 88591 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || ||||||||||| ||||| || || ||||| ||||| | || Sbjct 88590 GCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTG 88531 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || ||| || ||| ||||| || || || ||||| || ||||| || Sbjct 88530 ACATTGTCGATAGTGTCGGAAGATTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGAGT 88472 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || || || | |||| |||||| || | || ||||| Sbjct 89334 GTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCCAACTGCTTTCCG 89275 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || || ||||| || || || ||||| || ||||||||||| | || Sbjct 89274 GCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGAATCTTGGACTTG 89215 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | ||| || || || || || || ||||| || || | || Sbjct 89214 ACGTTGTCGATAGTGTC-CGAGGACTCGACTTCAAGGGTGATCGTCTTTCCGGTCAACGT 89156 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 89155 CTTCACAAAGATTTGCAT 89138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393428477596