Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq107 150 2e-31 seq288 95.1 1e-14 seq159 84.2 2e-11 >seq107 Length=1016152 Score = 150 bits (166), Expect = 2e-31 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||||||||| |||||||||| ||||| ||||| || | ||| ||||| | Sbjct 89364 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 89305 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| || ||||||| ||| |||||| | ||||| || | ||||||||| || | Sbjct 89304 A-AG-GTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCG 89247 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | ||| || | ||||||| | ||| |||||| | | |||| Sbjct 89246 GGATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGA 89187 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||| || ||||| || | || ||||||||||| ||||| Sbjct 89186 CTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 107 bits (118), Expect = 2e-18 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | |||||||| ||||||||||| || |||||||| || | ||| | Sbjct 89144 TTTGCATACCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGT 89085 Query 94833 AATCGCTCATAGTGTTGG--AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | ||| | || ||| | ||| || ||||| ||||| | ||||| |||| |||||| Sbjct 89084 AGTCG--GAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTG 89027 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || || || ||||| || || || | || || | || || | ||| ||||| | Sbjct 89026 GTCAGGCGGGATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGA 88967 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| || ||||| |||||||| || || || |||||||| Sbjct 88966 GGATTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| || | | |||| ||||| ||| || |||||||| | ||| || ||| Sbjct 88908 CCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAG 88849 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || |||||||| || || ||||||| |||| ||||| || |||||| Sbjct 88848 AGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 88789 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||| || |||||| | ||| || ||| ||||| Sbjct 88788 ATCCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATTGTATCACTCGACTCGACT 88729 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 88728 TCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 >seq288 Length=125410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||||||||| |||||||||||||| || ||||| || | ||| || ||| | Sbjct 9862 CCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 9803 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || ||||| || ||| | ||||| |||| ||||| || || || Sbjct 9802 AAGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 9743 Query 94901 ATACCTTCTTTGTCATAAAT 94920 |||||||| ||||| | ||| Sbjct 9742 ATACCTTCCTTGTCTTGAAT 9723 >seq159 Length=269225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTT--GGAA 94852 ||| ||||||||||| || || ||||| || | ||| || | | | || ||| | | Sbjct 15649 CAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGT--CCGAAAGGGTTCGGCCA 15592 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| | ||||| |||| ||||| || || || || ||||| ||| Sbjct 15591 TCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 15532 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||||||| | ||| ||||| | | ||||| || | |||||| Sbjct 15531 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 15472 Query 94973 GTTTTTCCAGTAAG 94986 || || || || || Sbjct 15471 GTCTTACCCGTGAG 15458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289311573320