Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq159 89.7 4e-13 seq107 86.0 5e-12 >seq159 Length=269225 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| || ||||||||||| | ||||| ||||| ||| Sbjct 15473 ATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGTCCAAGATCCAGGAC 15532 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || |||||||| || || || || ||| || |||| | || ||||||||| ||||||||| Sbjct 15533 AAGGAAGGCATCCCGCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAAGAT 15592 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 | | ||| | | || || ||||| || || || || || | || || || || || Sbjct 15593 GGCCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCTTGCACTTGGTCTTGAG 15651 >seq107 Length=1016152 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || ||||| | || ||| | ||||||||| | | Sbjct 88682 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCGAGT 88741 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | ||||| |||||| ||||| || || || ||||| || || Sbjct 88742 GATACAATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGGATTCCTCCTGACCAG 88801 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | | |||||||| || ||||| | | ||| || ||| || ||| Sbjct 88802 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 88861 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || || || Sbjct 88862 ATTCAAAAGGAGTCGAC 88878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934234172235