Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq107 116 3e-21 seq288 107 2e-18 seq129 107 2e-18 seq159 102 8e-17 >seq107 Length=1016152 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| |||| || || || | ||| |||||||| |||||||||||||| | Sbjct 89364 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 89305 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| | |||||| || ||| |||| || || ||||| || || ||| Sbjct 89304 AAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGG 89245 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | ||| || | |||||||| Sbjct 89244 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACT 89185 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| | || || || || || ||||| Sbjct 89184 TCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||||||||||||||| ||| | || || ||| || ||||||||||| Sbjct 88878 GTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCA 88819 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| || ||||||||||| ||||| || || || ||||| || || |||| Sbjct 88818 GCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGAATCTTGCTCTTG 88759 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||||| | ||||||| || | ||| | || || ||||| | || Sbjct 88758 ACATTGTCGATTGTATCACTCGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTC 88699 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 88698 TTGACGAAGATCTGCAT 88682 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| ||||| || || || | ||| || ||||| || |||||||| ||| Sbjct 89136 CCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 89077 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || |||||||| || ||| |||| || || |||||||| || ||| Sbjct 89076 AGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGG 89017 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || || | | || | || || | ||| || | Sbjct 89016 ATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACT 88957 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || ||||| ||||| || |||||||||||||| Sbjct 88956 TCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||| || | || | || || ||||| || ||||||||||| Sbjct 88680 CCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAG 88621 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || ||| |||| || || ||||| || ||||| Sbjct 88620 AGTGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 88561 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | ||| |||| || |||| Sbjct 88560 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTCGACC 88501 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| || | ||| || ||||| ||||| | | ||| Sbjct 88500 TCGAGAGTGATGGTCTTTCCGGTAAGAGTCTGTTCGA 88464 >seq288 Length=125410 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| |||| || || || | ||||||||||| || |||||||| ||| | Sbjct 9862 CCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 9803 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 9802 AAGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 9743 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 9742 ATACCTTCCTTGTC 9729 >seq129 Length=301134 Score = 107 bits (118), Expect = 2e-18 Identities = 476/745 (64%), Gaps = 8/745 (1%) Strand=Plus/Minus Query 144748 GGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGA 144807 ||| ||||| ||||||||||| || |||||||| |||| |||| ||| ||||| Sbjct 27717 GGTTCGCAAGTAGTACATGCCGGTCTTGAGTCCTTTCTTCCAACCGTAGAAGTGCATCGA 27658 Query 144808 CGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAAT 144867 ||| | | || | || || | | || | ||| || ||||| |||||| || Sbjct 27657 CGTGAGCTGACCCATCGAAGGGTTGGTCATGTGGATATTGAGGGATTGCGATTGATCGAT 27598 Query 144868 GAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTTCATTTCCCAAGCGGT 144927 || || |||||||| || | || || |||| || | ||||||||| | || Sbjct 27597 AAAGGCTCCTCGGTCGGCAGCGAGATCGATGATACCCTTCTGGCTGATTTCCCAAACAGT 27538 Query 144928 CTTGTACAAA-CGTTTAA-TGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTG 144985 |||||| | | | || || | || | |||||| | ||| || || || || | Sbjct 27537 CTTGTAGATAGCCTTCAACTCTG--CAGGAATGTTGGGAATGTTTTGGATGGAGCCACCG 27480 Query 144986 TGCGCAAATATGGCGTTCCGCATTTCGGACGTGT-ACAGTTTTAACTTGATCAAGTCGTC 145044 || || | || |||| ||| ||| ||| | || | |||| |||||| Sbjct 27479 TGTGCGATGATTCGGTTCTTCATCTCGT-CGTCCCAGAGACCCAGGTTGACCAAGTCACG 27421 Query 145045 AATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTT 145104 | || | | ||||||||| || || ||||| | |||||| || | || | ||| Sbjct 27420 CAACAACCAGGGGCAGACGACCTGGAAATCACCGGCGAGCACACGTCGGGAGTAAATGTT 27361 Query 145105 AGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGG 145164 ||| | ||||| ||| | ||||| |||||| ||||| | ||| | ||| || || Sbjct 27360 GCTGGTGTACGGTTCGAAACATTCGTTCCAGCCCAGAATTTGTGAGGTGGATGCAGTCGG 27301 Query 145165 CATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGT 145224 |||| || |||| | || ||||| ||||| ||| ||| | |||| | || Sbjct 27300 CATGGGAGCGACCAGGAGCGAGTTGCGTAGGCCAGTCTTGGCGATCTTGGCCTTCAAGGT 27241 Query 145225 ACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC 145284 |||||||||| || | | ||| | | | |||| | |||||||||||| |||| | Sbjct 27240 TGCCCAATCCCAGAGGGGCGACGGGGTAATGCCCCAAAGGTCGTACTGCAACTTGCCTTG 27181 Query 145285 GCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCC-CAAGTTTTGGCGAGCTCGCAAC 145343 ||||| ||| ||||| ||| |||| |||| | | || | || | ||| || Sbjct 27180 ACTGGCCGGGGAGCCTTCGTAGGTCTGGTAAGGGCCCTCCACTTCT-GCCATCTCAGAAG 27122 Query 145344 TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTT 145403 || ||| || ||| || || || || || |||||| |||||| | |||| Sbjct 27121 ACGACTCGAGCGCGGCGTGGTAGATGGTTTCAAAGATTTGCACGTTGAGTTGTCGGGCTT 27062 Query 145404 CATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCA 145463 | | ||| | |||||||||| | ||| | ||||||||| || || | || | Sbjct 27061 CGGGACCGTCGAAAGGCATGCGCAATGCCATAAAGGTATCGGCGAGACCTTGAACACCGA 27002 Query 145464 CGCCGATGGGCCGATGTTTCATGTT 145488 |||| || || ||| |||||| Sbjct 27001 GACCGACAGGACGGTGTCGCATGTT 26977 >seq159 Length=269225 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || || || || | ||| |||||||| || |||||||| || Sbjct 15663 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 15604 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 15603 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 15544 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 15543 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 15484 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | ||| ||||| || || Sbjct 15483 TCGAGGGTGATGGTCTTACCCGTGAG 15458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010811646080