Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq244 140 2e-28 seq251 104 2e-17 seq107 82.4 5e-11 >seq244 Length=305 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 196 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 255 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 256 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 290 >seq251 Length=302 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 113 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 172 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 173 GCCAATATTTAGCTTTA 189 >seq107 Length=1016152 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| || ||||| |||||||||||| ||||| || || | | || |||| || Sbjct 88890 ACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCC 88831 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || || || ||||| || | || || || || | || | || || |||||| | Sbjct 88830 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGA 88771 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCAACTTCTAATGTAATAGTTT 38286 || || ||| ||||| | || |||| ||| || || ||||| || || || || | Sbjct 88770 ATCTTGCTCTTGACATTGTCGATTGTATCACTCGAC--TCGACTTCCAAGGTGATTGTCT 88713 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || |||||||| || ||||| |||||||| Sbjct 88712 TTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945824309047