Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq107 105 6e-18 >seq107 Length=1016152 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||||||| || | ||||| | ||||| ||||| || Sbjct 89138 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 89197 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| | || | ||| ||||| ||||| || || || || || Sbjct 89198 GACACTATCGACAACGTCAAGTCCAAGATTCA-GGACAAGGAAGGCATCCCGCCCGATCA 89256 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || ||| | || || ||||| || || || || || | ||| || || |||||||| Sbjct 89257 GCAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAA 89316 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || || || || || || || || Sbjct 89317 CATTCAGAAGGAGTCTACCCTGCACTTGGT 89346 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 25015 AGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC 25074 ||||| | ||||| || ||||||| |||| || || || || ||||||||||| || Sbjct 88470 AGACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCTTCCGACACTATCGA--CAA 88527 Query 25075 TG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTT 25132 || ||| || ||| ||||| || || ||||| ||||| || || || | || || Sbjct 88528 TGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGATCTT 88587 Query 25133 TGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCGATTACAATATTCAAAAAGAA 25190 || || || || | ||||||| ||| |||| | | |||||||| || || || ||| Sbjct 88588 CGCTGGAAAGCAGCTCGAAGATGGTCGAACACTCTCG--GATTACAACATCCAGAAGGAA 88645 Query 25191 TCCACGCTACA 25201 |||||||| || Sbjct 88646 TCCACGCTTCA 88656 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 25015 AGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC 25074 ||||||||||||| || ||||||| | ||||| || ||||| ||||| || || Sbjct 89442 AGACTTTGACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACG 89501 Query 25075 TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTT 25133 | ||| | || | ||| ||||| ||||| ||||| || ||||| || || | || ||| Sbjct 89502 TCAAGTCGAAGATTCA-AGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTT 89560 Query 25134 GCCGGCAAACAATTAGAAGATG 25155 ||||| || || || ||||||| Sbjct 89561 GCCGGAAAGCAGTTGGAAGATG 89582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326220240655