Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq107 150 2e-31 seq288 96.9 3e-15 >seq107 Length=1016152 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||| || ||| |||| |||||||| || || | Sbjct 89138 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 89197 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| |||||||| || || || |||||||| Sbjct 89198 GACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGATCAG 89257 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || ||||| || ||||| ||||| || ||| | || ||||||||| Sbjct 89258 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 89317 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || || |||||||||||||| || ||| Sbjct 89318 ATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGGT 89365 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | ||||| || || |||| || ||||| ||| || | Sbjct 88910 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 88969 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | ||| || || || || ||||||||||| || || || || Sbjct 88970 GACACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCAG 89029 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||| | || ||| || ||| | ||||| |||||| Sbjct 89030 CAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAAC 89089 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | || || || |||||||||| || ||| Sbjct 89090 ATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGGT 89137 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22237 ACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATC 22296 ||| | ||||| || || ||||||| || || ||| | |||| || | ||| || || Sbjct 88472 ACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCTTCCGACACTATCGACAATGTC 88531 Query 22297 AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCC 22356 || || || || ||||||||||| ||||| || ||||| ||||| | || || || Sbjct 88532 AAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGATCTTCGCT 88591 Query 22357 GGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 || || ||| | || ||| || || |||| ||||||||||| || || |||||||| Sbjct 88592 GGAAAGCAGCTCGAAGATGGTCGAACACTCTCGGATTACAACATCCAGAAGGAATCCACG 88651 Query 22417 ATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || ||||| |||| || ||| Sbjct 88652 CTTCACCTCGTCTTGCGGCTGCGGGGTGGT 88681 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||| | ||||| || | | Sbjct 88682 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCGAGT 88741 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || ||||| ||||||||||| ||||| || || || Sbjct 88742 GATACAATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGGATTCCTCCTGACCAG 88801 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| ||||| ||| | || || ||| || ||||||| |||||| Sbjct 88802 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 88861 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 88862 ATTCAAAAGGAGTCGAC 88878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 22237 ACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATC 22296 ||||| ||||| || || ||||| | ||||| ||| | | || || | ||| | || Sbjct 89444 ACTTTGACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACGTC 89503 Query 22297 AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCC 22356 || || |||||||||||||| || ||||| ||||| || ||||| | || |||||| Sbjct 89504 AAGTCGAAGATTCAAGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTTGCC 89563 Query 22357 GGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 || || ||||| || ||| | | ||| | || ||||||| Sbjct 89564 GGAAAGCAGTTGGAAGATGGCAGGACCTTGTCTGATTACA 89603 >seq288 Length=125410 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 |||||||||||||| ||||| || || || || || || | || || |||||||| ||| Sbjct 9723 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 9782 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 | || ||| ||| ||| | ||||| |||||||| || || || || || | || || Sbjct 9783 CTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 9842 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| || ||| Sbjct 9843 GTCTTGCGATTGCGAGGTGGT 9863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726276098405