Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq159 158 2e-33 seq107 154 3e-32 seq288 109 1e-18 seq294 86.0 1e-11 >seq159 Length=269225 Score = 158 bits (174), Expect = 2e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | ||| |||||||| | |||||||| || |||||||| || || || Sbjct 15663 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 15604 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || | || || ||||| || || Sbjct 15603 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 15544 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 15543 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 15484 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | ||||||||| || ||||||||| Sbjct 15483 TCGAGGGTGATGGTCTTACCCGTGAGG 15457 >seq107 Length=1016152 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| |||||||| | ||||| || || |||||||| || ||||| || || | ||| Sbjct 89124 CGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCA 89065 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| || ||||| || | || ||| ||||| || || || || ||||| Sbjct 89064 TCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTA 89005 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || ||||| | || || ||||||||||| | ||||| ||||| | |||||| Sbjct 89004 TCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATT 88945 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || ||||||||||| |||||||| Sbjct 88944 GTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| || || ||||| || || ||||| ||||| || | || | || Sbjct 89352 CGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCG 89293 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || |||||||| |||||||| || | | ||| || ||||| || |||||||||||| Sbjct 89292 TCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTG 89233 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || |||||||| | ||||||| ||||| ||||| | || || ||||| | |||||| Sbjct 89232 TCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATC 89173 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || | ||||| || || || ||||| Sbjct 89172 GTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || | | |||| ||| || || ||||| ||||| ||||| || |||||| Sbjct 88908 CCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAG 88849 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || || || || | || || ||||| || ||| Sbjct 88848 AGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 88789 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| |||||| ||||| || || || || ||| Sbjct 88788 ATCCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATTGTATCACTCGACTCGACT 88729 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| || | |||||||||||| |||||||| Sbjct 88728 TCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Score = 145 bits (160), Expect = 1e-29 Identities = 128/160 (80%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| || | ||||| |||||||| |||||||| ||||| || || | || ||| ||| Sbjct 89601 TAATCAGACAAGGTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGG 89542 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 ||||| |||||||||||||||||||||||||| | ||||||| || || ||||| | Sbjct 89541 TCGGGCGGAATGCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAC 89482 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 ||||| |||||||| |||||||| || || || | |||| Sbjct 89481 GATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGTCT 89442 >seq288 Length=125410 Score = 109 bits (120), Expect = 1e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | || ||||| || |||||||| || ||||| | || | ||| Sbjct 9850 CGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGGCCA 9791 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| |||||||| || | || || ||||| || || || ||||||||| Sbjct 9790 TCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTG 9731 Query 68367 TCTTGAATCTTTG 68379 |||||||||| || Sbjct 9730 TCTTGAATCTGTG 9718 >seq294 Length=541177 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||| ||||| | |||||||||||||| ||||| || || ||||||||| Sbjct 378017 TATCGCCACAACATGTAGTCCAAGGGGGTCATGTCCAAGTGGTGATCGATGTGGTGGAAA 377958 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC 225084 || |||||||| ||||| | ||| || |||||| |||||||| || Sbjct 377957 GCGTGCTGGGCAACGTAACCGATGACCAAGTTGGGGTGCTTCCAAAC 377911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618517665640