Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq190 161 2e-34 seq129 93.3 8e-14 >seq190 Length=239985 Score = 161 bits (178), Expect = 2e-34 Identities = 291/409 (71%), Gaps = 21/409 (5%) Strand=Plus/Minus Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || |||||||||||||||||| || |||| || ||||| ||||| || ||||| ||||| Sbjct 13048 GCATCCATCTTCTGGCTCAAGAAGCGAGGTCTC-ATGCCGGGACTGACGTTCTCCAACGA 12990 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 ||||||| | | |||||||| || || | |||||||| |||||||| ||| | ||| Sbjct 12989 ACTCATCTCCCGAGACGAGGGACTCCACACCGACTTTGCATGCCTCCTCTTC---ACCCA 12933 Query 42872 CCTCAGGC-ACAA--GCCCTCGAAGGAGCG-GGTCCGGGCCATCATCACGGAGGCCGTGG 42927 ||| | | || | || | || | | || || || ||||||| || ||||| | Sbjct 12932 CCTGAAACGACGACCGCACCCGGA-AACCGTGGAACG---CATCATCCGTGAAGCCGTCG 12877 Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACG 42987 | |||| || ||||| ||| | | ||||| || || || ||||||||||| | Sbjct 12876 ACCTCGAATGTGAATTCCTGACGGACGCCCTGCCGGTCTCATTGATCGGCATGAACGAAA 12817 Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCT 43045 | ||||||||| ||||||| | || ||||||||| | ||| || || ||| | || Sbjct 12816 AGCTCATGTGCCAGTACATTCGGTTCGTCGCCGATCGTCTGCTCGTCGCC--CTTGGAAA 12759 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 | | | |||||| | ||| |||||||||||||| ||||| ||| | |||| Sbjct 12758 CGACAAGGTGTACAACGATACCAACCCGTTCGACTTTATGGAAAACATTTCGCTCCAGGG 12699 Query 43106 CAAGACCAACTTTTTCGAG--AAGCGCGTC-GCCGACTACCAGGTCAAG 43151 || |||||||||||||| | ||| ||| ||| ||| ||| ||| || Sbjct 12698 TAAAGCCAACTTTTTCGAGTCACGCGTGTCGGCCTACT-CCAAGTCGAG 12651 >seq129 Length=301134 Score = 93.3 bits (102), Expect = 8e-14 Identities = 214/318 (67%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTT 245190 |||| || ||||| |||||||| ||||||||||| || | |||||| || | Sbjct 26228 GCGAAAGCACCGGGTCGCTTGTTACCTCCCTGGTCGACG----TATCGAGCAGTCGCATC 26173 Query 245191 G-AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGG 245249 | ||| | || || | || || || || || |||| |||||||| || ||||| | Sbjct 26172 GTAAGCT-CGAAGCATGGGGACGATACCATTCGAGTACCCGTTGGTTCCGGCAATGTACG 26114 Query 245250 CGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGA 245309 |||||| | | || |||| ||| || || | ||||| || |||||||| | Sbjct 26113 ATCCCTTGGCTCGGATGTTGTGAATGTTCAATCCAATACCGCCCGCAGTTTTGGAGATCA 26054 Query 245310 GGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCA 245369 ||| || |||||| |||||| || ||||| || ||| |||||| || || Sbjct 26053 TGGCACAAGTCTTGAGGGTGTCGTAGATTCCCTCAATCGAGTCGTCCTTCATTGCGACCA 25994 Query 245370 GAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGT 245429 ||||| || |||| ||| || | || | | | |||||||| || || ||||| Sbjct 25993 AGAAGCACGAAGACAACTGAGGGTGAGGCGTACCGGCGTTGAACAAGGTCGGCGAGGCGT 25934 Query 245430 GGGTAAAGTAGCGGCTCG 245447 |||||||||| | ||||| Sbjct 25933 GGGTAAAGTATC-GCTCG 25917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335221971120