Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq107 140 8e-28 >seq107 Length=1016152 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || || ||||| ||||| | || ||||| ||||| Sbjct 89101 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAA 89042 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| || || || | ||||| || || ||||||||||| || | |||||| || Sbjct 89041 GATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCCTGGATCTTGGATTTCACATT 88982 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||||| |||||||| ||||| ||||| ||||| ||||||||||| Sbjct 88981 GTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGAC 88922 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 88921 GAAAATCTGCAT 88910 Score = 114 bits (126), Expect = 3e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||||| ||| || || |||||||| | || || || || ||| Sbjct 88872 TCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAG 88813 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 |||| ||||| || | || || || || || ||||| || || ||| || || || Sbjct 88812 ATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGAATCTT-GCTCTTGACATT 88754 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| || ||||| | ||||| ||||| ||||||| |||||||| Sbjct 88753 GTCGATTGTATCACTCGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGAC 88694 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 88693 GAAGATCTGCAT 88682 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 || || ||||| || || || ||||| |||||||||| || || ||| ||||| Sbjct 89301 GTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATG 89242 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||| || || | || ||||| || |||| || || || ||||| Sbjct 89241 CCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCA 89182 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| ||||||| ||||| || || || ||||| Sbjct 89181 AGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649306473486