Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq190 122 9e-23 seq107 84.2 2e-11 >seq190 Length=239985 Score = 122 bits (134), Expect = 9e-23 Identities = 242/354 (68%), Gaps = 7/354 (2%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || ||||||||| |||||| | || || || ||||| ||||| ||||| ||| Sbjct 13015 ATGCCGGGACTGACGTTCTCCAACGAACTCATCTCCCGAGACGAGGGACTCCACACCGAC 12956 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTG 52601 ||||| |||||| || || | | | ||| | | | | |||| || | Sbjct 12955 TTTGCATGCCTCCTCTTCA---CCCACCTGAAACGACGACCGCACCCGGAAACCGTGGAA 12899 Query 52602 AGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTC 52661 |||| || || || || | ||||| || || | |||| ||| ||||||||| Sbjct 12898 CGCATCATCCGTGAAGCCGTCGACCTCGAATGTGAATTCCTGACGGACGCCCTGCCGGTC 12839 Query 52662 GAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGT 52721 || | |||||||||| || ||||||| ||||||| ||| || || |||||| Sbjct 12838 TCATTGATCGGCATGAACGAAAAGCTCATGTGCCAGTACATTCGGTTCGTCGCCGATCGT 12779 Query 52722 CTGTTGGTGCAGCTCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTAT 52780 ||| | || || || | | ||| || | ||||| | ||| ||||| || ||||| Sbjct 12778 CTGCTCGTCGCCCTTGGAAACGACAAGGTG-TACAACGATACCAACCCGTTCGACTTTAT 12720 Query 52781 GAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAG--AAGCGAGTCGGC 52832 | | ||||||||||| |||| || |||||||||||||| | ||| |||||| Sbjct 12719 GGAAAACATTTCGCTCCAGGGTAAAGCCAACTTTTTCGAGTCACGCGTGTCGGC 12666 >seq107 Length=1016152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||||||| |||||||| || || | | | |||||||| ||||||||||| || | Sbjct 89364 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 89305 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| | || || |||| |||| | || || || || || || Sbjct 89304 AAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGG 89245 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | ||| || | ||||| | ||||| | Sbjct 89244 ATGCCTTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATAGTGTCCGAGGACTCGA 89187 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||| || || |||| || || ||||| || ||||| Sbjct 89186 CTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260309494640