Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq107 113 4e-20 seq159 91.5 1e-13 >seq107 Length=1016152 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||| ||| || || || ||||| |||||||| ||||| || ||||| Sbjct 88683 ATACCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCC 88624 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | || ||||| ||| | |||||||||||||| || || Sbjct 88623 GAGAGTGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGA 88564 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || || || || |||| || | ||||||||||| ||| Sbjct 88563 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTCG 88504 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGT 45322 || |||||||| | || || ||||| ||||| Sbjct 88503 ACCTCGAGAGTGATGGTCTTTCCGGTAAGAGT 88472 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || || ||||| || || || ||||| | |||| | || ||||| || Sbjct 89340 TGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCCAACTGC 89281 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||| |||||||| || ||||| |||||||| || || ||||| || Sbjct 89280 TTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGAATCTTG 89221 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||| || ||||||||||| || || | ||| || ||||| Sbjct 89220 GACTTGA-CGTTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTTCCGGT 89162 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| |||||||| Sbjct 89161 CAACGTCTTCACAAAGATTTGCAT 89138 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || |||||||| ||||| || || ||| | |||| ||| || | || Sbjct 89112 TGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGC 89053 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||||||||||||||| ||||| || || || ||||| || || || Sbjct 89052 TTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCCTGGATCTTG 88993 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | |||||| || || || |||||||| || | || || ||||| Sbjct 88992 GATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTTTCCGGTA 88933 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||| ||||| Sbjct 88932 AGAGTCTTGACGAAAATCTGCAT 88910 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || ||||| || | ||||||||||||||||| |||||||||||||| || Sbjct 89581 ATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGGTCGGGCGGAATGCCTTCCTT 89522 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 |||||||| || |||| || | || | ||||| || || |||||||| | ||| | Sbjct 89521 GTCTTGAATCTTCGACTTGA-CGTTGTCAATCGTGTCCGACGATTCGACTTCCAAAGTGA 89463 Query 45304 CCGTTTTGCCGGTTAGAGT 45322 || |||||||| | ||| Sbjct 89462 TGGTCTTGCCGGTCAAAGT 89444 >seq159 Length=269225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||||||||| || | |||| || || ||||| ||||| || || || Sbjct 15663 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 15604 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| ||| || | || || || ||| | |||||||| |||||||| ||||| Sbjct 15603 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 15544 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || || || || |||| || | || | |||||| || |||||||| Sbjct 15543 ATGCCTTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCCGAGGACTCGAC 15485 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAG 45319 ||||| || | || || || || || Sbjct 15484 CTCGAGGGTGATGGTCTTACCCGTGAG 15458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001295936520