Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq129 149 1e-30 seq190 87.8 3e-12 >seq129 Length=301134 Score = 149 bits (164), Expect = 1e-30 Identities = 456/696 (66%), Gaps = 38/696 (5%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || |||||||||| || || | ||||| || | | ||| || ||||||||||||||| Sbjct 27752 TCGACCGTGAACTTGATAGCATCGACGGCCGGTCGGGTTCGCAAGTAGTACATGCCGGTC 27693 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || || || |||| ||| ||||| | |||||| || | || | | || |||| | Sbjct 27692 TTGAGTCCTTTCTTCCAACCGTAGAAGTGCATCGACGTGAGCTGACCCATCGAAGGGTTG 27633 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCAT 204021 | |||||| || || || || || ||| ||||| |||||| || || || || || | Sbjct 27632 GTCATGTGGATATTGAGGGATTGCGATTGATCGAT-AAAGGCTCCTCGGTCGGCAGCGAG 27574 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA---------CACGTCT-C 204071 || ||| || |||||| || ||||| || |||||| | || ||| | Sbjct 27573 ATCGATGATACCCTTCTGGCTGATTTCCCAAACAGTCTTGTAGATAGCCTTCAACTCTGC 27514 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 || ||||| || | | || ||| ||||| || || || | || Sbjct 27513 AGGAATGTTG-GGAATGTTTT---------GGATGGAGCCACCGTGTGCGATGATTCGGT 27464 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || |||| || |||| | |||| ||| || || |||| || |||| || Sbjct 27463 TCTTCATCTCGTCGTCCCAGAGACCCAGGTTGACCAAGTCACGCAACAACCAGGGGCAGA 27404 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 || ||| || || |||| ||||| | ||||| | | | |||| ||||| | ||||||| Sbjct 27403 CGACCTGGAAATCACCGGCGAGCACACGTCGGGAGTAAATGTTGCTGGTGTACGGTTCGA 27344 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||| ||| | ||| || | |||| || || ||||||||||| | || | Sbjct 27343 AACATTCGTTCCAGCCCAGAATTTGTGAGGTGGATGCAGTCGGCATGGGAGCGACCAGGA 27284 Query 204312 GGGAGTTGCGCACACCGTATTTTTG--GACCCTGCGCTTCAGAGAGGTCCAGTC---GTG 204366 | |||||||| | || | | ||| || | || ||||| | | ||| || | | Sbjct 27283 GCGAGTTGCGTAGGCC--AGTCTTGGCGATCTTGGCCTTCAAGGTTGCCCAATCCCAGAG 27226 Query 204367 CATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 || || ||| | | |||||| | |||| |||| || ||||||||||| | ||| Sbjct 27225 GGGCG-ACGGGG--TAATGCCCCAAAGGTCGTACTGCAACTTGCCTTGACTGGCCGGGGA 27169 Query 204427 GCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCT---TGCACGAGGCGGCCAT 204483 ||| | ||| ||| | ||||| ||| ||||||||| || |||| || | Sbjct 27168 GCCTTCGTAGGTCTGGTAAGGGCCCTCCACTTCTGCCATCTCAGAAGACGACTCGAGCGC 27109 Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 |||||| ||| ||||| |||||||| || ||||| Sbjct 27108 GGCGTG---GTAGATGGTTTCAAAGATTTGCACGTT 27076 >seq190 Length=239985 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || |||||||| ||||||||| ||| ||||||||||| || ||||||| |||||||| Sbjct 12939 AAGAGGAGGCATGCAAAGTCGGTGTGGAGTCCCTCGTCTCGGGAGATGAGTTCGTTGGAG 12998 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGG 160019 | | || |||||||||| || ||| |||||||| || |||| Sbjct 12999 AACGTCAGTCCCGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGG 13044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151850408720