Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq107 125 2e-23 seq159 120 7e-22 seq288 104 6e-17 >seq107 Length=1016152 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || || ||||| ||||| ||||||||||||||||| | ||||||||| | | ||| Sbjct 88903 TCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGT 88844 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || |||||||||||||| || || ||||| | ||||||||||| ||| ||| || Sbjct 88843 TCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCC 88784 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| ||| || |||| || || | | || || ||||| Sbjct 88783 CTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATTGTATCACTCGACTCGACTTCCAA 88724 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || || || Sbjct 88723 GGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTG 88685 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 || |||||| | ||| | || || ||||| |||| ||||||||| | | || | ||| Sbjct 89125 TCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCC 89066 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| ||||||||||| |||||||| | || |||||||| || || || || Sbjct 89065 ATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTT 89006 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||| ||||| |||| |||||| | | ||| || || | ||||| Sbjct 89005 ATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGAT 88946 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || ||||| || Sbjct 88945 TGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 88913 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| | || || || | ||| || || |||||||| || | |||||| || | ||| || Sbjct 89359 TCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGT 89300 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || |||| |||||||||||||||||| | || ||||| || || || || Sbjct 89299 TCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCC 89240 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||||||||| ||| ||| |||| ||||| | | || || || | Sbjct 89239 TTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCAAG 89180 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | || |||||||| ||||| Sbjct 89179 GGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTG 89141 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| ||||| || || || ||||| |||| |||||| || | | || Sbjct 88674 CGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAGAGTGTT 88615 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||||||||| |||||||| | || ||||| || ||| |||||| Sbjct 88614 CGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCC 88555 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | ||| || || | Sbjct 88554 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTCGACCTCGAGA 88495 Query 199589 GTGATCGTCTTACCCGTGAGAGT 199611 ||||| ||||| || || ||||| Sbjct 88494 GTGATGGTCTTTCCGGTAAGAGT 88472 Score = 100 bits (110), Expect = 7e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 |||| |||| ||| ||||| |||||||||| |||||||||||| ||||| | || |||| Sbjct 89603 TGTAATCAGACAAGGTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCT 89544 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| || ||| ||||| || |||||||| ||| ||| || | ||||| | Sbjct 89543 GGTCGGGCGGAATGCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATCGTGTCCG 89484 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 | ||| || ||||| ||||| ||||| || || | ||| Sbjct 89483 ACGATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGT 89444 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||||||||||||||| || || | || ||| | ||||||||| | ||||| Sbjct 89267 ATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAACATTCAGAAG 89326 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 |||||||| || ||| | |||||| || | ||| Sbjct 89327 GAGTCTACCCTGCACTTGGTTTTGCGATTGCGA 89359 >seq159 Length=269225 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || |||| ||| | ||| | || |||||||| |||| ||||||||| | | || Sbjct 15658 TCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 15599 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| |||||||| ||||||||||| | ||||||||||| || || || Sbjct 15598 TCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCC 15539 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 15538 TTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAG 15479 Query 199588 CGTGATCGTCTTACCCGTGAG 199608 ||||| |||||||||||||| Sbjct 15478 GGTGATGGTCTTACCCGTGAG 15458 >seq288 Length=125410 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| | || || ||| | ||| | |||||||||||| |||| ||||||||| | ||| || Sbjct 9857 TCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGT 9798 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| |||||||| ||||||||||| | ||||||||||| || || || Sbjct 9797 TCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACC 9738 Query 199528 TTCTCGCTCCTGAATCT 199544 ||| || ||||||| Sbjct 9737 TTCCTTGTCTTGAATCT 9721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178916509637579