Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq107 129 7e-25 seq159 120 3e-22 seq288 102 9e-17 >seq107 Length=1016152 Score = 129 bits (142), Expect = 7e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || ||||||||| || ||||||||||| ||||| || |||| || Sbjct 88890 ACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCC 88831 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || ||||| ||||||||||| | || | | |||||||||| Sbjct 88830 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGA 88771 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||||| | | | || || ||||| || || |||| ||||| || || Sbjct 88770 ATCTTGCTCTTGACATTGTCGATTGTATCACTCGACTCGACTTCCAAGGTGATTGTCTTT 88711 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || ||||| ||||| Sbjct 88710 CCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| || ||||| |||| |||| ||| |||||| || || ||||| || || Sbjct 89364 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 89305 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || |||| || | |||||| |||||||| ||||| || ||||| |||| ||| Sbjct 89304 AAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGG 89245 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| ||||| ||||| ||| | | | ||||| || || || Sbjct 89244 ATGCCTTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCGATAGTGTCCGAGGACTCGAC 89186 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || || || |||| ||| || |||||||||||||| Sbjct 89185 TTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || |||| |||| ||||| || ||||| ||||| ||||||||||| || || || Sbjct 89127 AATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGT 89068 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || ||||||||||| || ||||| ||||| || |||||||| | ||| | | |||| Sbjct 89067 CCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCC 89008 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 || ||| |||||| || | | | | ||||| ||||| || || | ||| Sbjct 89007 TTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTG 88948 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || || || || || ||||| Sbjct 88947 ATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || || || || || | || ||||||||||| || ||||| Sbjct 88644 TCCTTCTGGATGTTGTAATCCGAGAGTGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAG 88585 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || ||||| || | || | | |||||||||| |||||| ||||| | Sbjct 88584 ATCAATCGTTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 88525 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | | |||||| ||||| || || | |||||||| || || || || || Sbjct 88524 TCGATAGTGTCGGAAGATTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGAGT 88472 >seq159 Length=269225 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| |||| ||||| || |||||| ||||| |||||||| || || || || | || Sbjct 15649 CAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCATC 15590 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||||||||||||||||||| ||||| ||||||||||| | ||| | || |||||||| Sbjct 15589 TTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 15530 Query 46501 CATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGG 46559 | |||||| ||||| ||| | | | ||||| || || || || | ||||||| Sbjct 15529 CTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGG 15471 Query 46560 TTTTGCCCGTCAG 46572 | || ||||| || Sbjct 15470 TCTTACCCGTGAG 15458 >seq288 Length=125410 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| || ||||| |||| ||||| || |||||| ||||| ||||||||||| Sbjct 9862 CCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 9803 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || |||||||||||||||||||| ||||| ||||||||||| | || Sbjct 9802 AAGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 9743 Query 46487 ACGCTCTCCTTGTC 46500 | | |||||||| Sbjct 9742 ATACCTTCCTTGTC 9729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236018933240