Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq107 102 8e-17 seq159 98.7 1e-15 seq190 93.3 4e-14 seq288 84.2 2e-11 >seq107 Length=1016152 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || |||||| |||| || || || | Sbjct 88910 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 88969 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | ||| || |||| || || ||||| || |||||| ||||| Sbjct 88970 GACACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTAT-CCCGCCTGACCA 89028 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || || ||||| || || | || ||||| ||||||||| Sbjct 89029 GCAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAA 89088 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || |||| ||||| ||||| ||| | || || Sbjct 89089 CATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGG 89136 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || || |||||| | || |||||| | | Sbjct 88682 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCGAGT 88741 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | || | | |||| || || | ||||| ||||| ||||| | |||| Sbjct 88742 GATACAATCGACAATG--TCAAGAGCAAGATTCAGGACAAGGAGGGGATTCCTCCTGACC 88799 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||| |||||||| |||| || || ||| |||||||| Sbjct 88800 AGCAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACA 88859 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||| |||||||| |||| ||||| |||| || Sbjct 88860 ACATTCAAAAGGAGTCGACTCTGCACCTGGTCCT 88893 >seq159 Length=269225 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 |||||||| || ||||||||| |||| |||||| || | |||| | | | |||| | || Sbjct 15458 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAA 15516 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGG 38382 || |||| ||||| || || || |||||| ||||| ||||| | || | ||| | Sbjct 15517 GTCCAAGATCCAGGACAAGGAAGGCAT-CCCGCCTGACCAGCAGCGATTGATCTTCGCCG 15575 Query 38383 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGC 38442 |||| ||||| || || | || ||||| |||||||||||||| ||||| | || Sbjct 15576 GCAAGCAGCTCGAAGATGGCCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCT 15635 Query 38443 TGCATTTGGT 38452 |||| ||||| Sbjct 15636 TGCACTTGGT 15645 >seq190 Length=239985 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| | | ||| || |||||||||| | ||||||||| |||||| || Sbjct 13331 GTAGGTGTCGATCAAGAGCGAGTAGGTTTCCGAGTGAATGTTCTCCATCATGATTTGGAA 13390 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||| || || ||| | || ||||| | ||| |||||||| || || Sbjct 13391 ACCGTAGAAGAACTTGGCTTCGGCGCATTGAACTTCGGACGAGAATCGCTCGACGAGGTT 13450 Query 133287 TTCGTTGACGATGCCGTCG 133305 |||||||||||| |||||| Sbjct 13451 TTCGTTGACGATACCGTCG 13469 >seq288 Length=125410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| || || || ||| | ||||| ||||| | || | ||| ||||| ||||| || Sbjct 9729 GACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAA 9788 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || ||| | ||||||||||||||| ||||| |||| |||| ||||| || Sbjct 9789 GATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTCTTG 9848 Query 38457 CGTTTGAGAGGCGG 38470 || ||| |||| || Sbjct 9849 CGATTGCGAGGTGG 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170693022080