Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq107 154 3e-32 seq159 141 2e-28 seq288 105 1e-17 >seq107 Length=1016152 Score = 154 bits (170), Expect = 3e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCC 194983 || |||||| | ||| || || ||||| || ||||| |||||||| | |||| |||| | Sbjct 89353 TCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAG-GTTCGAC 89295 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 | || || | |||||| || |||||||| | ||||| || || || || |||||||| | Sbjct 89294 CGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCT 89235 Query 195044 TGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAA 195103 |||| ||||| || ||||||||| || || |||||||| || ||||||||||| | Sbjct 89234 TGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGA 89175 Query 195104 CCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||| ||||| || || || || | |||||| Sbjct 89174 TCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || |||||||| ||||| || || || || |||||||| | || |||| ||||| Sbjct 88666 CAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAGAGTGTTCGACCATC 88607 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||||||||| || |||||||| | |||||| || || |||||||| || || ||||| Sbjct 88606 TTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCCTCCTTGTC 88547 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || |||||| || || || ||||| ||| ||| || || || || | || Sbjct 88546 CTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTCGACCTCGAGAGTGATGGT 88487 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACA 195133 |||||| || | ||| | | ||| || Sbjct 88486 CTTTCCGGTAAGAGTCTGTTCGAGCA 88461 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| || || || || ||||| |||| ||| |||| ||||||||||||||||| || Sbjct 89106 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCA 89047 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | |||||| ||||| || || || || || || || || || || || Sbjct 89046 GCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCCTGGATCTTGGATTTC 88987 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || ||||||||||| ||| ||||| ||||| | |||||||| || | ||| Sbjct 88986 ACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTC 88927 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 88926 TTGACGAAAATCTGCAT 88910 Score = 131 bits (144), Expect = 4e-25 Identities = 129/164 (79%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 194960 TATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018 || ||||||| | |||| || || |||||||| | |||||| || || ||||| | |||| Sbjct 89606 TACTGTAATCAGACAAG-GTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGT 89548 Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || ||||| || ||||||||||| ||||||||||| || ||||||||| ||||| ||| Sbjct 89547 TGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATCGTG 89488 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| ||| ||||| | || | ||||| || |||||||| Sbjct 89487 TCCGACGATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGT 89444 >seq159 Length=269225 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| ||||| || | ||| | |||||||| || || || ||||| || | ||| || Sbjct 15658 TCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 15599 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || ||||||||||||||||| || |||||||| | ||| || ||||| || || ||||| Sbjct 15598 TCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCC 15539 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || ||||||||| || ||||||||||| || || || || Sbjct 15538 TTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAG 15479 Query 195099 GGTAACCGTCTTTCCTGT 195116 ||| | ||||| || || Sbjct 15478 GGTGATGGTCTTACCCGT 15461 >seq288 Length=125410 Score = 105 bits (116), Expect = 1e-17 Identities = 103/130 (79%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCC 194983 || ||| || | ||| | ||| ||||| || || || ||||| |||| |||| |||| | Sbjct 9851 TCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTTCGGC 9793 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 |||||||||||||||| || |||||||| | ||| || ||||| || || || ||||| | Sbjct 9792 CATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCT 9733 Query 195044 TGTCTTGAAT 195053 |||||||||| Sbjct 9732 TGTCTTGAAT 9723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476809466479