Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq107 104 2e-17 >seq107 Length=1016152 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| ||||| || || || ||| || ||||| |||||||| || | ||||| || Sbjct 89352 CGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCG 89293 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||||||||| ||||| || |||| || || ||||| | || | ||| |||||| Sbjct 89292 TCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTG 89233 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| || || | | || || || | ||| || || | || ||| Sbjct 89232 TCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATC 89173 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| || || ||||| || ||||| Sbjct 89172 GTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| |||||||| ||||| || || ||| |||| |||| |||| |||||| || ||||| Sbjct 88873 CTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAA 88814 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| |||||| || || | |||| ||||||||||| |||||| || ||| Sbjct 88813 GATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGAATCTTGCTCTTGACATT 88754 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||| || |||| || || || ||||| ||||| || || || Sbjct 88753 GTCGATTGTATCACTCGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGAC 88694 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 88693 GAAGATCTGCAT 88682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936035417851