Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq190 86.0 1e-11 >seq190 Length=239985 Score = 86.0 bits (94), Expect = 1e-11 Identities = 240/371 (65%), Gaps = 11/371 (3%) Strand=Plus/Minus Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || |||||| || ||| || |||||||| |||| Sbjct 13044 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCGGGACTGACGTTCTCCAACGAACTCA 12985 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGC 26053 || | | |||||||| ||||||| || ||||| ||||| |||| ||| |||| || Sbjct 12984 TCTCCCGAGACGAGGGACTCCACACCGACTTTGCATGCCTCCTCTTCAC---CCACCTGA 12928 Query 26054 TCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 | ||| | || ||||| | | |||||| || || || || |||| Sbjct 12927 AACGACGACCGCACCCGGAAACCGTGGAACGCATCATCCGTGAAGCCGTCGACCTCGAAT 12868 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 || || | | ||||||||| | | |||||| Sbjct 12867 GTGAATTCCTGACGGACGCCCTGCCGGTCTCATTGATCGGCATGAACGAAAAGCTCATGT 12808 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACT 26231 |||| |||||| || || ||||| | |||||| || ||| || ||| || || | Sbjct 12807 GCCAGTACATTCGGTTCGTCGCCGATCGTCTGCTCGTCGCC--CTTGGAAACGACAAGGT 12750 Query 26232 CTACAGTACG--CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 |||| ||| | |||||||||||||||||||||||||| ||| | | || || || Sbjct 12749 GTACA--ACGATACCAACCCGTTCGACTTTATGGAAAACATTTCGCTCCAGGGTAAAGCC 12692 Query 26290 AACTTCTTTGA 26300 ||||| || || Sbjct 12691 AACTTTTTCGA 12681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840887241280