Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq107 87.8 1e-11 >seq107 Length=1016152 Score = 87.8 bits (96), Expect = 1e-11 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | ||||| || ||||| |||||||| || | || || || ||||||||| Sbjct 88848 AGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 88789 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGT 480724 || || |||||||| |||||||| |||||| || || |||||| | | | | | Sbjct 88788 ATCCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATTGTATCACTCGACTCGACT 88729 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||| ||| || || || ||||| | ||||| ||||| || || Sbjct 88728 TCCAA-GGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTG 88685 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||||||||| || || | ||||| || ||||| || || || ||||| Sbjct 89065 ATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTT 89006 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| ||| ||| || || || || | | | | ||| ||||| || Sbjct 89005 ATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGAT 88946 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||| |||||||| || Sbjct 88945 TGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 88913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268164744434876