Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq139 138 1e-26 seq1 129 7e-24 seq294 122 1e-21 seq129 114 2e-19 seq190 107 2e-17 seq267 86.0 8e-11 >seq139 Length=279249 Score = 138 bits (152), Expect = 1e-26 Identities = 142/183 (78%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTT 1592178 ||||||||| |||||| ||||| | | || || ||| | ||||| || | Sbjct 78969 CGACATCTCCGAATGGGACGGCAAGTTTATCCAAGTTGACCAGGAGATGCTCTTCGAAAT 78910 Query 1592179 GATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGT-GCAAGTCTG 1592237 ||||| || |||||||| || |||||||||||| ||||||| ||||||| ||||| ||| Sbjct 78909 CATCCTTGCTGCCAACTATCTGGACATCAAGCCTTTGCTCGA-CTTGGGTTGCAAGACTG 78851 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 | ||||||||||||||||||||| | |||||||||||||| ||| || |||||| || Sbjct 78850 TCGCCAACATGATCAAGGGCAAGACTCCCGAGGAGATCCGAAAGTTGTTCAACATCCAGA 78791 Query 1592298 ACG 1592300 ||| Sbjct 78790 ACG 78788 >seq1 Length=1150063 Score = 129 bits (142), Expect = 7e-24 Identities = 249/364 (68%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 18121 GTCGGCTGCATCATCGACGGCGTGCCG--CCGTGCATGCCACTGGCCGAGGCCGACATCC 18178 |||||| ||||||||||||| |||| ||| || || | || | | | ||||||| Sbjct 741739 GTCGGCGCCATCATCGACGGC-TGCCCACCCGGGC-TGACGCTCACAAATGAAGACATCC 741682 Query 18179 AGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGC 18238 || ||| | || || || ||||||||| ||| | | || ||||| | ||| Sbjct 741681 AGGTCCAGCTCTCCCGCCGACGTCCGGGCCAGAGCGACATCACGACCCCGCGGAGCGAAT 741622 Query 18239 CCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCG 18298 |||| ||||| || || || || ||||| | || |||| |||||| |||| ||| Sbjct 741621 TCGATTCCGTCACTATTCAATCCGGGACGGAACATGGGGTCACCCTCGGCACGCCGATCG 741562 Query 18299 GCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGC 18358 | ||| | || ||| || || ||||| ||| || |||| | | | | Sbjct 741561 GGCTCGTCGTCCAGAACAAGGATCAACGGCCGCACGATTACACCGAGACGGATTTCTTCC 741502 Query 18359 CGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGG 18418 |||| || || |||||||| | ||||||| | |||||||||||| ||||||| || || | Sbjct 741501 CGCGTCCTTCCCACGCCGATTTCACCTACCTCGCCAAGTACGGCGTCAAGGCTTCCTCCG 741442 Query 18419 GCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCG 18478 | || ||||| | || || || ||||| || ||| ||||||||||| ||| | || | Sbjct 741441 GTGGTGGCCGTGCCTCGGCGCGGGAGACGATCGGGCGTGTCGCCGCCGGTGCGATTGCGG 741382 Query 18479 AGAA 18482 | || Sbjct 741381 AAAA 741378 Score = 102 bits (112), Expect = 1e-15 Identities = 105/134 (78%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCA--GGCCTCGGCGAGCCGT 19110 || |||||||| | || ||||| || ||| |||| || ||||| |||||||| | Sbjct 741118 ATGGGCGGCACCATCACCTGCGTCATCCGGAAC-TGCCC-CATGGGCCTGGGCGAGCCAT 741061 Query 19111 GCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGG 19170 |||||||||| ||||||||| ||||| ||||| ||||| || |||||| ||||||| | Sbjct 741060 GCTTTGACAAACTCGAGGCCGTCCTCGCGCACGCGATGCTCTCCATCCCGTCCACCAAAG 741001 Query 19171 GATTCGAGATTGGC 19184 | |||||||| ||| Sbjct 741000 GGTTCGAGATCGGC 740987 >seq294 Length=541177 Score = 122 bits (134), Expect = 1e-21 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||||| || ||||||||||||||| |||| || Sbjct 326727 GCTTGGAAAGCTCTCCGGGAAGGATCAATCGGCAGGCGGTCTGGATCTCTCGCGACGAGA 326668 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| || ||||| || |||| | || || | | |||| || |||| | Sbjct 326667 TGGTGGATCGGTTGTTGTAGACGGCCAACTTGGATGCTTCAGCGGCGATTCGCTCGAAAA 326608 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| ||| || ||||||| || ||||| | |||||||||||| || |||||||| Sbjct 326607 TGTCGGAGACGAAAGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCAGTGTCGGGGT 326548 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| |||||||||||| | |||||||| || Sbjct 326547 GGACCTGCTTGAGGACCTTGTAGATGTAGGACGAGTAGGA 326508 >seq129 Length=301134 Score = 114 bits (126), Expect = 2e-19 Identities = 185/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTG---TCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 |||||||||||| || || || |||| ||| | || |||||||| |||| || || Sbjct 26199 CTGGTCGACGTATCGAGCAGTCGCATCGT--AAG-CTCGAAGCATGGGGACGATACCATT 26143 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || | |||||||| || || | ||| | || ||| || | ||||| | || Sbjct 26142 CGAGTACCCGTTGGTTCCGGCAATGTACGATCCCTTGGCTCGGATGTTGTGAATGTTCAA 26083 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || || ||||| || | |||||||| | || || ||||| ||||||||||| || Sbjct 26082 TCCAATACCGCCCGCAGTTTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATTCC 26023 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||| ||||||||| ||||||| | || | |||||||| || || ||||| | ||| Sbjct 26022 CTCAATCGAGTCGTCCTTCATTGCGACCAAGAAGCACGAAGACAACTGAGGGTGAGGCGT 25963 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCG 1630324 ||||||||||| | || |||| Sbjct 25962 ACCGGCGTTGAACAAGGTCGGCG 25940 >seq190 Length=239985 Score = 107 bits (118), Expect = 2e-17 Identities = 173/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 868684 GACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 868743 |||| || ||||| ||| | |||||| |||||||||||||| || |||| ||| Sbjct 12647 GACGCTCGACTTGGAGTAGGCCGACACGCGTGACTCGAAAAAGTTGGCTTTACCCTGGAG 12706 Query 868744 CGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAG 868803 ||| || ||||| | ||||||||||| ||||| ||| ||| ||| || Sbjct 12707 CGAAATGTTTTCCATAAAGTCGAACGGGTTGGTATCGTTGTACACCTTGTCGTTTCCAAG 12766 Query 868804 CGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCAT 868863 | ||||||| || |||||||| ||| ||||||||||||||||| ||||||| Sbjct 12767 GGCGACGAGCAGACGATCGGCGACGAACCGAATGTACTGGCACATGAGCTTTTCGTTCAT 12826 Query 868864 GCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 |||||| | | |||||||| | || ||| || || |||| |||||||| || Sbjct 12827 GCCGATCAATGAGACCGGCAGGGCGTCCGTCAGGAATTCACATTCGAGGTCGACGGCTTC 12886 Query 868924 GACGATGAT 868932 |||||| Sbjct 12887 ACGGATGAT 12895 >seq267 Length=209274 Score = 86.0 bits (94), Expect = 8e-11 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 507111 TCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACTTTACCG 507170 |||||||||||||||| || |||| ||||| |||||||||||| ||| | || ||| Sbjct 208154 TCAAGGGCAAGGAGGGCCGGCTCCGGGGCAACCTCATGGGCAAGCGTGTCGATTTCTCCG 208095 Query 507171 CGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGCCCTATG 507230 |||| | ||||||| | |||||| | ||||| | || |||| ||||| ||| Sbjct 208094 CGCGAACAGTCATCACCGGCGACCCGAACCTCGACTTGGATCAGGTCGGCGT-CCCGCGC 208036 Query 507231 AG-ATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCC 507270 || |||| | || | |||| || ||||| |||||||| Sbjct 208035 AGCATCGCGATGAACTTGACCTACCCGGAGCGGGTGACGCC 207995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107111544201829