Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq294 143 4e-28 seq139 118 2e-20 seq129 93.3 7e-13 seq190 91.5 2e-12 seq267 87.8 3e-11 >seq294 Length=541177 Score = 143 bits (158), Expect = 4e-28 Identities = 181/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 1485480 GACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCG 1485539 ||||||||||||||| || |||| ||||||| ||| || || ||| | | ||||| || Sbjct 326756 GACGGCCTTGGTACCTTCAGAGATGGCGTGCTTGGAAAGCTCTCCGGGAAGGATCAATCG 326697 Query 1485540 CACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG 1485599 ||||||||||||||| || | ||| ||| || ||||| | |||| Sbjct 326696 GCAGGCGGTCTGGATCTCTCGCGACGAGATGGTGGATCGGTTGTTGTAGACGGCCAACTT 326637 Query 1485600 GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACAT 1485659 | || || | | |||| || |||| |||||| ||| || ||||||| ||| ||||| Sbjct 326636 GGATGCTTCAGCGGCGATTCGCTCGAAAATGTCGGAGACGAAAGAGTTCAAGATGGACAT 326577 Query 1485660 CGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGA 1485719 | ||||||||||| || ||||||||| ||||||||||| |||||||| | |||| Sbjct 326576 GGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTAGATGTAGGA 326517 Query 1485720 CGAGTACGA 1485728 |||||| || Sbjct 326516 CGAGTAGGA 326508 >seq139 Length=279249 Score = 118 bits (130), Expect = 2e-20 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||| || | ||||| || |||||||| || ||||||||||| | ||||| ||||| Sbjct 78920 CTCTTCGAAATCATCCTTGCTGCCAACTATCTGGACATCAAGCCTTTGCTCGACTTGGGT 78861 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||| || |||||| | |||||||||||| | |||||||| ||||| ||| || Sbjct 78860 TGCAAGACTGTCGCCAACATGATCAAGGGCAAGACTCCCGAGGAGATCCGAAAGTTGTTC 78801 Query 2035749 AACATCAAGTACG 2035761 |||||| || ||| Sbjct 78800 AACATCCAGAACG 78788 >seq129 Length=301134 Score = 93.3 bits (102), Expect = 7e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 2071772 CGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCG 2071831 |||| || || ||||||| ||| ||| || || |||| ||||| | | || Sbjct 26494 CGTCGAAAGCCTTGCCGTGGACTTCGGACAGACCCGGACACTCGTTGGGGCACATCAACG 26435 Query 2071832 ACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAA 2071891 |||||||||| | | | | || || ||||| |||| |||| |||| || |||| | Sbjct 26434 CCCAGTCGCCGTCCGCCTCGACACGTCGCATGAACATGTCGGGGATCCAGAGCGCGTAGA 26375 Query 2071892 AGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGA 2071951 | || || || || ||| || |||||||||||||||||| || |||| |||||| Sbjct 26374 ACAGGTCTCGGGCTCGGACTTCTTCCTTGCCGTGGTTCTTTCGAAGATCGATGAAGTCGA 26315 Query 2071952 CGAGGTCGGCGTGCCACGGCTCCAGGTAG 2071980 || || |||||||| || || |||||| Sbjct 26314 AGACATCCGCGTGCCAGGGTTCGAGGTAG 26286 >seq190 Length=239985 Score = 91.5 bits (100), Expect = 2e-12 Identities = 176/255 (69%), Gaps = 11/255 (4%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||||| || ||||| || | |||||| |||||||||||||| || |||| || Sbjct 12646 TGACGCTCGACTTGGAGTAGGCCGACACGCGTGACTCGAAAAAGTTGGCTTTACCCTGGA 12705 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGC--CGTCAGGTAGTGCTTCTCGCACCC 794008 |||| || ||||| | ||||||||||| ||| ||| ||| ||| || Sbjct 12706 GCGAAATGTTTTCCATAAAGTCGAACGGGTTGGTATCGTT--GTACACCTTGTCGTTTCC 12763 Query 794009 GAG--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCG 794066 || ||||| ||||| || ||||||||||| |||||||||||||||||| || Sbjct 12764 AAGGGCGACG--AGCAGACGATCGGCGACGAACCGAATGTACTGGCACATGAGCTTTTCG 12821 Query 794067 TTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126 ||||||||||| | | || ||||| | || | | || || |||| |||||| Sbjct 12822 TTCATGCCGATCAATGAGACCGGCAGGGCGTCCGTCAGGAATTCACATTCGAGGTCGACG 12881 Query 794127 GCCTC---GATGATG 794138 || || ||||||| Sbjct 12882 GCTTCACGGATGATG 12896 >seq267 Length=209274 Score = 87.8 bits (96), Expect = 3e-11 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 429063 CGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACTTT 429122 ||| |||||||||||||||||||| |||| ||||| |||||||||||| ||| | || Sbjct 208158 CGACTCAAGGGCAAGGAGGGCCGGCTCCGGGGCAACCTCATGGGCAAGCGTGTCGATTTC 208099 Query 429123 ACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGCCC 429182 | ||||| | ||||||| |||||| | ||||| | || |||| ||||| ||| Sbjct 208098 TCCGCGCGAACAGTCATCACCGGCGACCCGAACCTCGACTTGGATCAGGTCGGCGT-CCC 208040 Query 429183 TATGAG-ATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCC 429226 || |||| | || | |||| || ||||| |||||||| Sbjct 208039 GCGCAGCATCGCGATGAACTTGACCTACCCGGAGCGGGTGACGCC 207995 Score = 86.0 bits (94), Expect = 1e-10 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 431099 CGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCAGCG 431158 ||| || || ||| | |||| || ||||||||||||||||||||||| ||||||||||| Sbjct 206404 CGGTCGAGAAGGTTTGATCGATACCGCCGTCAAGACGGCCGAGACGGGTTACATCCAGCG 206345 Query 431159 TCGGTGCATCAAATCGATGGAG 431180 ||||| | ||| |||||||| Sbjct 206344 TCGGTTGGTGAAAGCGATGGAG 206323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916210551772943