Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq107 118 8e-22 >seq107 Length=1016152 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||| || |||| || | |||||||||||||| || || ||||| ||||||| Sbjct 88680 CCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAG 88621 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| ||||| || || ||||| | ||||||| ||||||||| || ||| Sbjct 88620 AGTGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 88561 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | |||||| ||| ||| || Sbjct 88560 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTCGACC 88501 Query 29740 TCAAGAGTTATAGTTTTGCCAGT 29762 || ||||| || || || || || Sbjct 88500 TCGAGAGTGATGGTCTTTCCGGT 88478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||| || || || || || ||||||||||| || || | | || || || Sbjct 88893 AGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCT 88834 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || ||||||||| | ||||||| ||||| || || ||||| ||||| ||||| Sbjct 88833 TCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCC 88774 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | |||||| | || | || ||| || ||||| | || || || Sbjct 88773 TG-AATCTTGCTCTTGACATTGTCGATTGTATCACTCGACTCGACTTCCAAGGTGATTGT 88715 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || || |||||||| Sbjct 88714 CTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217617832517