Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq316 89.7 4e-12 >seq316 Length=516184 Score = 89.7 bits (98), Expect = 4e-12 Identities = 351/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 281936 ACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTA 281995 || ||||||||||| || | | || |||||||| || || || |||||| | Sbjct 186767 ACCTTTTCAACGGGGTCCATGGTCGATCGGAACAAGTCCTGGCACAGCTCCTCGAATCGA 186708 Query 281996 GCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCG 282053 |||| || ||| || | || || || || ||||||||||| || || | || |||| Sbjct 186707 GCTCGGGT--GAGCGAGGTGTAGAAGTCGATACCTTCGAACAAGGAGTCGATCTCGATCG 186650 Query 282054 TAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC 282113 || || | | || || | | || || || |||||||| || || | | || || Sbjct 186649 AGGTCTGGGCGGCCGAGGACAAGGTTCGCTTGGCTCGTTCACAGGCGGTTCGCAATCGTC 186590 Query 282114 GTAAGGCTTTTGCTGATTGATT-CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACA 282172 | | |||| || | | || ||| || | || | |||| |||||| |||| ||| Sbjct 186589 GGAGGGCTCGGGC-GTTGGAGGACAAGTCCTTCTTGTTCTTTCGCTTGAACTCTTGGACA 186531 Query 282173 CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTA 282232 | | || | || || || ||||||||||| ||||| | || | || | || Sbjct 186530 AAGTGGTTGACCAATCGGTTGTCGAAATCTTCACCACCCAAGTGGGTGTCACCGGCGGTG 186471 Query 282233 GCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCA 282292 || | || | ||| | || ||||| | | ||| || | |||||| |||||||| Sbjct 186470 GCCTTGACCTCGAAGATACCCTCTTCGATGGTCAAGAGGGAAACATCGAAAGTTCCACCT 186411 Query 282293 CCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACG 282350 |||| ||||| || | || ||| |||| || || || || || | ||| || | Sbjct 186410 CCCAAGTCAAAGATCAAGACGTTC--TTCTCGCCCTCGGACTTCTTGTCCAAACCGTAGG 186353 Query 282351 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 282410 | | || || || || || || || || |||| ||| || || | ||| | || | Sbjct 186352 CGATGGCGGCGGCGGTAGGCTCGTTGATGATTCGCAAGACGTTCAAACCCGAGATCAGAC 186293 Query 282411 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 282470 | ||||| || || || |||| || || ||||| || || || || || || | |||| Sbjct 186292 CGGCATCCTTGGTAGCCTGTCGCTGCGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGG 186233 Query 282471 CATC 282474 | || Sbjct 186232 CGTC 186229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740613854724162