Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq129 125 7e-24 seq190 114 1e-20 seq107 100 3e-16 seq159 98.7 1e-15 seq281 89.7 5e-13 >seq129 Length=301134 Score = 125 bits (138), Expect = 7e-24 Identities = 227/332 (68%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 148263 ACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCA 148322 || ||||| || || ||||||||||| || || || | |||||| || ||||||| Sbjct 27404 ACGACCTGGAAATCACCGGCGAGCACACGTCGGGAGTAAATGTTGCTGGTGTACGGTTCG 27345 Query 148323 AACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGC 148382 || | ||||| ||||| ||| || | ||| | ||| || |||||| || ||||| Sbjct 27344 AAACATTCGTTCCAGCCCAGAATTTGTGAGGTGGATGCAGTCGGCATGGGAGCGACCAGG 27285 Query 148383 AGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGC 148442 ||||||||||| | || || || ||| ||||| | ||||| |||||||| Sbjct 27284 AGCGAGTTGCGTAGGCCAGTCTTGGCGATCTTGGCCTTCAAGGTTGCCCAATCCCAGAGG 27225 Query 148443 GGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCC 148502 |||||||| || | | ||| | ||||||||||| |||| | || || ||| ||| Sbjct 27224 GGCGACGGGGTAATGCCCCAAAGGTCGTACTGCAACTTGCCTTGACTGGCCGGGGAGCCT 27165 Query 148503 TCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCG 148562 ||||| | ||| || || | | | | |||| || | || |||||||||| || Sbjct 27164 TCGTAGGTCTGGTAAGGGCCCTCCACTTCTGCCATCTCAGAAGACGACTCGAGCGCGGCG 27105 Query 148563 TAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 | ||| || || || |||||| |||||| Sbjct 27104 TGGTAGATGGTTTCAAAGATTTGCACGTTGAG 27073 >seq190 Length=239985 Score = 114 bits (126), Expect = 1e-20 Identities = 258/380 (68%), Gaps = 11/380 (3%) Strand=Plus/Plus Query 120364 ACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAAC 120423 |||||| ||| |||||||| | ||| |||| | ||||||||| | |||||| |||||| Sbjct 12672 ACGCGTGACTCGAAAAAGTTGGCTTTACCCTGGAGCGAAATGTTTTCCATAAAGTCGAAC 12731 Query 120424 GGGTTGCTCGCGT--TAAAGTATTTCGGCTGGCCCAACTG-TACGAGCAGTCGGTCCGCT 120480 |||||| | ||| || | | ||| | |||| | |||||||| || || || Sbjct 12732 GGGTTGGTATCGTTGTACACCTTGTCGTTT---CCAAGGGCGACGAGCAGACGATCGGCG 12788 Query 120481 ACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAAC 120540 || ||| |||||||| ||||||| || |||||||||| | ||| | ||||||| Sbjct 12789 ACGAACCGAATGTACTGGCACATGAGCTTTTCGTTCATGCCGATCAATGAGACCGGCAGG 12848 Query 120541 GCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTG 120600 || ||| | || || || | ||| || || || || || ||| | | | Sbjct 12849 GCGTCCGTCAGGAATTCACATTCGAGGTCGACGGCTTCACGGATGAT-GCGTTC-CACGG 12906 Query 120601 TGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAAAGTCCGTGTG 120659 | ||||| | || ||| | | || | | || ||||| |||||||| ||||| Sbjct 12907 TTTCCGGG--TGCGGTCGTCGTTTCAGGTGGGTGAAGAGGAGGCATGCAAAGTCGGTGTG 12964 Query 120660 CAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTT 120719 || |||||||| || || || || |||||| |||||||| || ||||||| ||| Sbjct 12965 GAGTCCCTCGTCTCGGGAGATGAGTTCGTTGGAGAACGTCAGTCCCGGCATGAGACCTCG 13024 Query 120720 CGTCTTGATGTAGAATATGG 120739 | |||||| |||| |||| Sbjct 13025 CTTCTTGAGCCAGAAGATGG 13044 >seq107 Length=1016152 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || |||||||| || || ||| |||||| | Sbjct 89343 AAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACC-GTCCTCCAA 89285 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || | ||| ||||| ||||| ||||||||||||||||| || Sbjct 89284 CTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGAAT 89225 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | || ||| || || | ||||| || || || Sbjct 89224 CTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTTCC 89165 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || || ||||| Sbjct 89164 GGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || ||||| || ||||| ||| | || | | | || ||||| Sbjct 89115 AAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCA-TCTTCGAG 89057 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || | || |||||||| || ||||| || ||||| || ||| Sbjct 89056 CTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCCTGGAT 88997 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || | | || | ||||| | || || || |||| ||||| || || || Sbjct 88996 CTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTTTCC 88937 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| || |||||||||||||| Sbjct 88936 GGTAAGAGTCTTGACGAAAATCTGCAT 88910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/189 (70%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 ||||| || ||||| || |||||||| | | ||| ||| || ||||||||||| | Sbjct 88650 GTGGATTCCTTCTGGATGTTGTAATC--CGAGAGTGTTCGACCATCTTCGAGCTGCTTTC 88593 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || ||||| || ||||| || || |||||||| |||||| || Sbjct 88592 CAGCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACT 88533 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | || || |||| |||| ||| || ||||| |||| Sbjct 88532 TGACATTGTCGATAGTGTCGGAAGATTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGAG 88473 Query 133642 TTTTTACGA 133650 | | | ||| Sbjct 88472 TCTGTTCGA 88464 >seq159 Length=269225 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| || | || | | | || ||||| Sbjct 15642 AAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCA-TCTTCGAG 15584 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || | ||||||||||| || ||||||||||||||||| ||| Sbjct 15583 CTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGAT 15524 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | || ||| || |||| ||||| ||| || || Sbjct 15523 CTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACC 15464 Query 133634 GGTCAG 133639 || || Sbjct 15463 CGTGAG 15458 >seq281 Length=140732 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535 || |||||||| ||| |||| || |||| | ||||| |||||||||||||| ||| Sbjct 82778 GGGTTCCACGTTCACCAGTTCGGTGACAACTCGAACGGTTGCACCTCCGCCGGTCCTCAC 82719 Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595 |||||||||||||| ||||||| | | | ||||| || | ||||| |||||| Sbjct 82718 TTCAACCCCACCGGTGTCAACCACGGTGACCGAACCGCCGAGGTCAGGCACGTTGGTGAC 82659 Query 116596 CTGGGCAAC 116604 |||||||| Sbjct 82658 TTGGGCAAC 82650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418763589880