Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq118 96.9 8e-15 >seq118 Length=311515 Score = 96.9 bits (106), Expect = 8e-15 Identities = 185/267 (69%), Gaps = 12/267 (4%) Strand=Plus/Plus Query 279874 GGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGT 279933 |||||| ||||| ||| || || ||| | | || ||||||||||| |||| | || Sbjct 30717 GGATGGGTTGAAGCCTGGTCAACGAAAGGTCTTGTTTGGTTGTTTCAAACGAAAGCTCGT 30776 Query 279934 AAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCA 279993 |||||||| || || || | || ||||| || || ||| | | | ||| ||||| Sbjct 30777 CAAGGAAATCAAGGTCGCCCAACTTGCGGGTTACGTGTCTGAAAAGACGGCTTACCATCA 30836 Query 279994 CGGTGAAGCGTCTCT--TCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTAT-GGCTTC 280050 ||||||| || || ||| | | ||||| ||||| ||||| | ||| | ||| | Sbjct 30837 CGGTGAACAATCGCTGGTCATG--ACAATTGTCGGTCTCGCCCAGAACTTTGTCGGCAGC 30894 Query 280051 AAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGA-- 280108 || ||| | || || || || || ||||||||||| ||| | ||||| | |||| Sbjct 30895 -AATAACATCAACCTTCTCTCGCCCAATGGTCAATTCGGTACGCGTAT---CGCTGGAGG 30950 Query 280109 -AAAGATCATGGTAGTGCTCGTTACAT 280134 |||||| | |||||||||||||| Sbjct 30951 TAAAGATGCGGCCAGTGCTCGTTACAT 30977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186807675564857