Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq107 113 1e-19 seq288 89.7 1e-12 >seq107 Length=1016152 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || ||||| |||||||| | ||||| || || ||||| |||| Sbjct 89153 AAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCGGACACTATCGACAAC 89212 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || ||||| || ||| || ||| | | |||||| Sbjct 89213 GTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGATCAGCAACGGTTGATCTTC 89272 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||||||||| || || | || ||| | ||||||||| | ||||| |||||| Sbjct 89273 GCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAACATTCAGAAGGAGTCT 89332 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||| | |||||| || | ||| Sbjct 89333 ACCCTGCACTTGGTTTTGCGATTGCGA 89359 Score = 111 bits (122), Expect = 4e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||||||||||| ||| || ||||| | || || ||| Sbjct 89450 ACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACGTCAAGTCG 89509 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| ||| ||| ||| || | ||||| ||||||||| Sbjct 89510 AAGATTCAAGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTTGCCGGAAAG 89569 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACA 206347 |||||||||||||| ||||| ||| | ||||||| Sbjct 89570 CAGTTGGAAGATGGCAGGACCTTGTCTGATTACA 89603 >seq288 Length=125410 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 |||||||||| || ||||| || || ||| || || | ||||||||||| |||| Sbjct 9721 AGATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGC 9780 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACC 206374 || | |||||||| | || ||| |||| |||||| ||||||| ||||| ||| | ||| Sbjct 9781 AGCTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACT 9840 Query 206375 TTGTTTTGAGACTTCGA 206391 | || ||| || | ||| Sbjct 9841 TGGTCTTGCGATTGCGA 9857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181815697119377