Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq294 127 3e-23 seq129 113 6e-19 seq190 95.1 2e-13 seq267 86.0 9e-11 >seq294 Length=541177 Score = 127 bits (140), Expect = 3e-23 Identities = 179/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||||||| ||||||||||| ||||||||||| || |||||| | ||| | Sbjct 326508 TCCTACTCGTCCTACATCTACAAGGTCCTCAAGCAGGTCCA-CCCCGA--CACTGG--TA 326562 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 | |||||||||| ||||||| ||| ||||||| || ||| |||||| |||| || ||| Sbjct 326563 T-CTCCAACAAGGCCATGTCCATCTTGAACTCTTTCGTCTCCGACATTTTCGAGCGAATC 326621 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | | || || |||| || |||||| || ||| ||| |||| ||| Sbjct 326622 GCCGCTGAAGCATCCAAGTTGGCCGTCTACAACAACCGATCCACCATCTCGTCGCGAGAG 326681 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||||||| || ||||| | | ||| || || ||| ||||||| |||| || Sbjct 326682 ATCCAGACCGCCTGCCGATTGATCCTTCCCGGAGAGCTTTCCAAGCACGCCATCTCTGAA 326741 Query 725136 GGCACCA 725142 || |||| Sbjct 326742 GGTACCA 326748 >seq129 Length=301134 Score = 113 bits (124), Expect = 6e-19 Identities = 181/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| || | || || ||||| ||||| | ||| ||| || |||||||| || | | Sbjct 25940 CGCCGACCTTGTTCAACGCCGGTACGCCTCACCCTCAGTTGTCTTCGTGCTTCTTGGTCG 25999 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||||| ||| ||||| ||||| ||||| ||||| |||||| || || | |||| Sbjct 26000 CAATGAAGGACGACTCGATTGAGGGAATCTACGACACCCTCAAGACTTGTGCCATGATCT 26059 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 |||| | || ||||| || || || | ||||| | || ||| ||| | ||| Sbjct 26060 CCAAAACTGCGGGCGGTATTGGATTGAACATTCACAACATCCGAGCCAAGGGATCGTACA 26119 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || || |||||||| | || || || | || ||||||||||| | || | | | Sbjct 26120 TTGCCGGAACCAACGGGTACTCGAATGGTATCGTCCCCATGCTTCGAGCTTACGATGCGA 26179 Query 260163 CGGCGCGCTACGTCGACCAG 260182 | || || |||||||||||| Sbjct 26180 CTGCTCGATACGTCGACCAG 26199 >seq190 Length=239985 Score = 95.1 bits (104), Expect = 2e-13 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 1455988 TTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTG 1456047 || || ||||| ||||| ||| || || ||||| ||||| ||||||||||||||| || Sbjct 13402 TTCTTCTACGGTTTCCAAATCATGATGGAGAACATTCACTCGGAAACCTACTCGCTCTTG 13343 Query 1456048 ATCGACACCTACGTCAAGGACCCGG 1456072 |||||||||||| |||||||||||| Sbjct 13342 ATCGACACCTACATCAAGGACCCGG 13318 Score = 89.7 bits (98), Expect = 7e-12 Identities = 177/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || |||||||| |||| || || | | || | |||||||| | Sbjct 12895 ATCATCCGTGAAGCCGTCGACCTCGAATGTGAATTCCTGACGGACGCCCTGCCGGTCTCA 12836 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 | ||||||||||||| | ||||||||||||||||||| || |||||||| || | Sbjct 12835 TTGATCGGCATGAACGAAAA-GCTCATGTGCCAGTACATTCGGTTC-GTCGCCGATCGTC 12778 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGG--CCAACCCGTTCCCATGGA 1456700 |||||| || || || || | ||| ||| ||| ||||||||||| | | Sbjct 12777 TGCTCGTCGCCCTTGGAAACG-ACAAGGTGTACA--ACGATACCAACCCGTTCGACTTTA 12721 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACG 1456759 |||| || |||||| |||| || |||||||||||||| |||||| | | ||| Sbjct 12720 TGGAAAACATTTCGCTCCAGGGTAAAGCCAACTTTTTCGAGTCACGCGTGTCGGCCTACT 12661 Query 1456760 CCAAGGCCGGCGTCA 1456774 ||||| | |||||| Sbjct 12660 CCAAGTCGAGCGTCA 12646 >seq267 Length=209274 Score = 86.0 bits (94), Expect = 9e-11 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 1818070 TGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGAT-CTCATAGGGCACG 1818128 || || | |||||||| ||||| || |||| | || | |||| || ||| ||| Sbjct 207987 TGTTATACGGCGTCACCCGCTCCGGGTAGGTCAAGTTCATCGCGATGCTGCGCGGG-ACG 208045 Query 1818129 CCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTG 1818188 || |||| || | ||| | | |||||| | ||||||| | ||||||| || | | Sbjct 208046 CCGACCTGATCCAAGTCGAGGTTCGGGTCGCCGGTGATGACTGTTCGCGCGGAGAAATCG 208105 Query 1818189 ACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGA 1818237 || |||||||||||| ||||| |||| || ||||||||||||||||| Sbjct 208106 ACACGCTTGCCCATGAGGTTGCCCCGGAGCCGGCCCTCCTTGCCCTTGA 208154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177778695730594