Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq107 134 1e-26 seq159 104 2e-17 seq288 93.3 4e-14 >seq107 Length=1016152 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| |||| | ||||| |||| ||||||||||| || ||||| Sbjct 88873 CTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAA 88814 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| | |||||||||| ||||| ||| | | | Sbjct 88813 GATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGAATCTTGCTCTTGACATT 88754 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || ||||| || || |||| ||||| || || || ||||| || || || Sbjct 88753 GTCGATTGTATCACTCGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGAC 88694 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 88693 GAAGATCTGCAT 88682 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | ||| ||||| || | ||| |||||| |||||||||||||| | | Sbjct 89364 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 89305 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 |||||||| |||| |||| |||||| || || || |||||||| ||||| || | || Sbjct 89304 AAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGG 89245 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| ||||| ||| | |||| | | ||||| || || || Sbjct 89244 ATGCCTTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCGATAGTGTCCGAGGACTCGAC 89186 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||||| || || ||||| || |||||||| || ||||| Sbjct 89185 TTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || ||| || | || | ||| ||||| || ||||||||||| | Sbjct 88680 CCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAG 88621 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || || |||||||| || || || ||||| || ||||| || | |||| Sbjct 88620 AGTGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 88561 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | |||||| ||||| ||| Sbjct 88560 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTCGACC 88501 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGT 35718 || | ||||| || || || || | ||| Sbjct 88500 TCGAGAGTGATGGTCTTTCCGGTAAGAGT 88472 >seq159 Length=269225 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||| ||||| || || || |||||| || |||||||| || | Sbjct 15663 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 15604 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || || |||||||| || || || ||||| ||||||||||| | || Sbjct 15603 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 15544 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| |||||| ||| | |||| | | ||||| || || || Sbjct 15543 ATGCCTTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCCGAGGACTCGAC 15485 Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712 ||| | ||||| || |||||||| Sbjct 15484 CTCGAGGGTGATGGTCTTACCCGT 15461 >seq288 Length=125410 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | ||| ||||| || || || |||||| || |||||||| |||| | Sbjct 9862 CCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 9803 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 |||||||| | || || |||||||| || || || ||||| ||||||||||| | || Sbjct 9802 AAGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 9743 Query 35630 ACGCTCTCCTTGTC 35643 | | |||||||| Sbjct 9742 ATACCTTCCTTGTC 9729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791701031960