Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq129 100 3e-16 seq190 93.3 5e-14 >seq129 Length=301134 Score = 100 bits (110), Expect = 3e-16 Identities = 478/752 (64%), Gaps = 16/752 (2%) Strand=Plus/Plus Query 105200 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTC 105259 || || || ||| |||||||||| | |||||||||||||| |||||||| ||| || Sbjct 26971 AACTCGAACATGCGACACCGTCCTGTCGGTCTCGGTGTTCAAGGTCTCGCCGATACCTTT 27030 Query 105260 AT-TCTTTGTCGCCACGCATTT-GA--TTCCGACGAAGCGAAGGAAATCAATGCGCGCAT 105315 || | ||| || || || ||| || ||| |||||| || |||| | || || Sbjct 27031 ATGGCATTG-CG-CATGCCTTTCGACGGTCC--CGAAGCCCGACAACTCAACGTGCAAAT 27086 Query 105316 ATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGG 105375 ||||| ||||| || |||||||| || ||| || ||| ||| ||||||| || || || Sbjct 27087 CTTTGAAACCATCTACCACGCCGCGCTCGAGTCGTCTTCTGAGATGGCAGAAGTGGAGGG 27146 Query 105376 TCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTG 105435 || || | |||| || || || || || ||||| | | || | || | || Sbjct 27147 CCCTTACCAGACCTACGAAGGCTCCCCGGCCAGTCAAGGCAAGTTGCAGTACGACCTTTG 27206 Query 105436 GGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAA 105495 || | | || | || || |||| | | | |||| ||| ||| Sbjct 27207 GGGCATTACCCCGTCGCCCCTCTGGGATTGGGCAACCTTGAAGGCCAAGATCGCCAAGAC 27266 Query 105496 GGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTT 105555 || || || ||| ||||| | ||||| ||||| || || |||||| ||||||| | Sbjct 27267 TGGCCTACGCAACTCGCTCCTGGTCGCTCCCATGCCGACTGCATCCACCTCACAAATTCT 27326 Query 105556 GGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGC 105615 ||| || ||||| || ||||| ||||| | ||||| || || | ||||| Sbjct 27327 GGGCTGGAACGAATGTTTCGAACCGTACACCAGCAACATTTACTCCCGACGTGTGCTCGC 27386 Query 105616 GGGAGAGTTTGTGATTGTCAACAAGCATCTCG----TGGATGACCTCAAAGAGATTGGTC 105671 || || || | | ||| || || | || |||| | | | |||| Sbjct 27387 CGGTGATTTCCAGGTCGTC----TGCCCCTGGTTGTTGCGTGACTTGGTCAACCTGGGTC 27442 Query 105672 TCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTG 105731 ||||| | | || |||||| | | || | | ||||| ||||| ||||| ||| Sbjct 27443 TCTGGGACGACGAGATGAAGAACCGAATCATCGCACACGGTGGCTCCATCCAAAACATTC 27502 Query 105732 TGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGG 105791 | ||||| || | ||| | ||| || ||||||||||||| ||||| Sbjct 27503 CCAACATTCCTGCAGAGTTGAAGGCTATCTACAAGACTGTTTGGGAAATCAGCCAGAAGG 27562 Query 105792 ATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATC 105851 | |||| || | || || || || || ||| || |||||| ||| | ||| Sbjct 27563 GTATCATCGATCTCGCTGCCGACCGAGGAGCCTTTATCGATCAATCGCAATCCCTCAATA 27622 Query 105852 TCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGA 105911 || |||| | || ||||| ||||| | || |||||| | ||| ||||||||| Sbjct 27623 TCCACATGACCAACCCTTCGATGGGTCAGCTCACGTCGATGCACTTCTACGGTTGGAAGA 27682 Query 105912 AGGGTCTCAAAACGGGGATGTATTACCTCCGA 105943 | || ||||| || || ||||| ||| | ||| Sbjct 27683 AAGGACTCAAGACCGGCATGTACTACTTGCGA 27714 >seq190 Length=239985 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 |||||||||||||||||||||||||| || || ||||||||||| || ||||| || Sbjct 13036 TGGCTCAAGAAGCGAGGTCTCATGCCGGGACTGACGTTCTCCAACGAACTCATCTCCCGA 12977 Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||||||| || ||||| Sbjct 12976 GACGAGGGACTCCACACCGACTTTGC 12951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258343013880