Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq179 165 2e-35 seq107 154 4e-32 >seq179 Length=244808 Score = 165 bits (182), Expect = 2e-35 Identities = 554/855 (65%), Gaps = 8/855 (1%) Strand=Plus/Minus Query 182928 ATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGT 182987 ||||| || | ||||| || |||| || || |||||||| |||||||||||| ||| Sbjct 113151 ATACCGTTGGCGTCAATGTCGAATGTGACCTCGATCTGTGGGACACCTCGTGGCGCTGGA 113092 Query 182988 GGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTTGCTCTCTCG 183047 ||||| || | || |||| ||| | || ||||| |||| || | || Sbjct 113091 GGAATACCGGACAAGTCGAATTTACCGAGCAAGTTGCAGTCTTTGGTTCGGGCACGTTCA 113032 Query 183048 CCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACTTGC 183107 |||||| | ||||| || || | ||||| || || ||| || || || | || Sbjct 113031 CCTTCAAAGACTTGGATCAAGACACCGGGCTGGTTGTCGGCATAGGTCGAGAAGATTTCA 112972 Query 183108 TTTTTATTAATAGGAATAGTTGAATTTCGCG-GAACAATTACAGTCATTACTTCTCTGGC 183166 || || | || | || | |||||| || ||| | ||||| || ||| ||| Sbjct 112971 GACTTTTTGGTGGGCACGGTCGTGTTTCGCTTGATCAAGGGC-GTCATGACACCTCCGGC 112913 Query 183167 AGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTTATC 183226 || || | || | || || || || || || || || || || ||| || || Sbjct 112912 GGTCTCGATACCCATCGACAAGGGCGCAACGTCGAGCAACAACAAGTCTTGCGTCTTGGA 112853 Query 183227 TGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATC 183286 || | | | | || || ||||| || || || ||||| || || || |||||||| Sbjct 112852 CGAGGTGTCACCGGTCAAGATGGCAGCCTGGACGGCGGCACCGTACGCGACGGCTTCATC 112793 Query 183287 TGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAAT 183346 ||||| || || || |||| || || ||||| || || | | | |||||| Sbjct 112792 CGGGTTGATGGATCGGTTCGGTTCTCGACCGTTGAAAAAGTCGGAGACGAGCTTTTGAAT 112733 Query 183347 TTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCGAT--ATTACTTTTACTA 183404 || || || | ||| ||||||||||| | || | || | || | |||| | | Sbjct 112732 CTTGGGGATCCGAGTGGAACCACCGACGAGGACGATCTCGTTGACGGACGACTTGTC--A 112675 Query 183405 ATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATA 183464 || | ||||| || || ||||| || || ||||| || | || || || ||| | Sbjct 112674 ATCTTGGAATCCCGCAAGACCTTTTCGACCGGATCCATGGTCTGTCGGAACAAGTCTTGA 112615 Query 183465 CATAACTCTTCTAATCTTGCTCTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAG 183524 |||| |||||| |||| |||| || | || | ||||||| ||||| | | | Sbjct 112614 CATAGCTCTTCGAATCGAGCTCGGGTGATGGAAGTGTAAAAGTCGATACCCTCGAACAGA 112555 Query 183525 GAATCAATTTCAATCGATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACAT 183584 ||||| ||||| || | || || | | || || || |||| || |||||||| || Sbjct 112554 GAATCGATTTCGATTGTCGTCTGCGCGGCGGAAGACAAGGTTCGCTTCGCTCGTTCGCAA 112495 Query 183585 GCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTT 183644 || |||| ||||| || | | || | || | | ||||| | || | |||| Sbjct 112494 GCCGTTCGCAGTCGTCGGAGCGCTCGGGCGTTGTTCGAGATATCCTTCTTGTTCTTTCGC 112435 Query 183645 TTAAATTCAGTAATAAAATG-TTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATG 183703 || ||||| || ||||| |||| | | || | ||||| ||||||||||| ||||| Sbjct 112434 TTGAATTCCTGAACGAAATGGTTGACG-AGTCGGTTGTCAAAGTCTTCACCACCCAAATG 112376 Query 183704 TGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATAC 183763 || || || || || || || |||||||| || || ||||| || | || | || || Sbjct 112375 GGTGTCACCGGCGGTCGCCTTGACTTCAAAGATGCCCTCTTCGATGGTCAAGAGGGAGAC 112316 Query 183764 ATCAAATGTACCACC 183778 ||| || || ||||| Sbjct 112315 ATCGAACGTTCCACC 112301 >seq107 Length=1016152 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || |||| || || | || | || || || || || || || | Sbjct 89144 TTTGCATACCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGT 89085 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||||| |||||||| || || |||||||| ||||| | |||||||| | Sbjct 89084 AGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGT 89025 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || |||||||| || || | ||| ||||| || || | || || | Sbjct 89024 CAGGCGGGATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGG 88965 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||| || || | |||||||||||| || || || || ||||||||||| Sbjct 88964 ATTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 Score = 141 bits (156), Expect = 3e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | || || || || || ||||| ||||| |||||||| || || || Sbjct 88912 CATACCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTC 88853 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || || ||||||||||| | || ||||| ||||| Sbjct 88852 GGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGG 88793 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || |||||||| || ||| || ||||| || || | |||| | | Sbjct 88792 AGGAATCCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATTGTATCACTCGACT 88734 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| | || | |||||||||||| | || || || || |||||||| Sbjct 88733 CGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || |||| | ||| | || || |||||||| || ||||| || ||||| Sbjct 89368 CATACCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATC 89309 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || ||||| || || || | || ||||| || ||||| | ||||||||||| || Sbjct 89308 CGACAAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGG 89249 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| || |||||||| || | || || || || || | || || | || Sbjct 89248 CGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTC 89189 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| || | ||||||||||| | || || ||||| || ||||| Sbjct 89188 GACTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 136 bits (150), Expect = 1e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | | || || ||||| || || || || || || || ||||| Sbjct 88684 CATACCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATC 88625 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | |||||| |||||||| || || |||||||| ||||| | |||||||||||||| Sbjct 88624 CGAGAGTGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGG 88565 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||||||| || || ||||| || || | || ||||| || || | || || | ||| Sbjct 88564 AGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTC 88505 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || || || || | ||||||||||| || || Sbjct 88504 GACCTCGAGAGTGATGGTCTTTCCGGTAAGAGT 88472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247857415611