Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq129 136 4e-27 seq190 91.5 2e-13 >seq129 Length=301134 Score = 136 bits (150), Expect = 4e-27 Identities = 269/393 (68%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 79522 CGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGC 79581 |||||| || ||||||| |||||| || || || | | || |||| |||||||| Sbjct 26213 CGCTTGTTACCTCCCTGGTCGACGTATCGAGCAGTCGCATCGTAAGCTCGAAGCATGGGG 26154 Query 79582 ACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC 79641 ||||| || | | | ||||| || ||| || | || | || || ||||| Sbjct 26153 ACGATACCATTCGAGTACCCGTTGGTTCCGGCAATGTACGATCCCTTGGCTCGGATGTT- 26095 Query 79642 GAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGT 79700 | | | || | ||| || || || | |||||||| || || |||||| || Sbjct 26094 GTGAATGTTCAATCCAATACCGCCCGCAGTTTTGGAGATCATGGCACAAGTCTTGAGGGT 26035 Query 79701 CTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTG 79760 |||||||| ||||| ||||||||||||||||| ||||||| |||||| |||| ||| Sbjct 26034 GTCGTAGATTCCCTCAATCGAGTCGTCCTTCATTGCGACCAAGAAGCACGAAGACAACTG 25975 Query 79761 TGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT 79820 |||| ||||||||||||||| | |||||||| ||||| || ||| | | | Sbjct 25974 AGGGTGAGGCGTACCGGCGTTGAACAAGGTCGGCGAGGCGTGGGTAAAGTATCGCTCGGA 25915 Query 79821 CATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGAC 79880 ||| || | || ||||| | || || ||| ||||||||| ||||| ||||| Sbjct 25914 CATGAGGTTATATGTCTCAATAACCTTTTCGACGTCTCGGCCGTGGATACCGACGGCGAC 25855 Query 79881 GCGCATGAAGAGGTACTG-GGGCGTCTCGCCGA 79912 ||||||| | || ||| || ||| ||| ||| Sbjct 25854 TCGCATGATCATGTGCTGAGGTCGT-TCGGCGA 25823 Score = 125 bits (138), Expect = 8e-24 Identities = 307/458 (67%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 20369 GGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATG 20428 || || ||||||||| | || ||||| ||||||||||| || || ||| | || || || Sbjct 27268 GGCCTACGCAACTCGCTCCTGGTCGCTCCCATGCCGACTGCATCCACCTCACAAATTCTG 27327 Query 20429 GGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCC 20488 || ||||| |||||| |||||||| | |||||| |||| || ||| || ||| Sbjct 27328 GGCTGGAACGAATGTTTCGAACCGTACACCAGCAACATTTACTCCCGACGTGTGCTCGCC 27387 Query 20489 GGTGAGTTCGTCATGGTAAACAAGCACCTGGTC----CGCGACTTGCAGAAGATCGATAT 20544 ||||| ||| || ||| | || |||||| || |||||| || | | | | Sbjct 27388 GGTGATTTC--CA-GGTCGTCT-GCCCCTGGTTGTTGCGTGACTTGGTCAACCTGGGTCT 27443 Query 20545 GTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGG-CATTGG 20603 ||| | | || ||||| ||| || | ||| || | |||| |||| Sbjct 27444 CTGGGACGACGAGATGAAGAACCGAATCATCGCACACGGTGGCTCCATCCAAAACATTCC 27503 Query 20604 ATA---TCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGA 20660 | ||| |||| | |||| || |||| ||| || ||||||||| |||||| Sbjct 27504 CAACATTCCTGCAGAGT-TGAAGGCTATCTACAAGACTGTTTGGGAAATCAGCCAGAAGG 27562 Query 20661 GCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATG 20720 | |||||||| | || ||||| || || |||| ||||| || || || || |||||| Sbjct 27563 GTATCATCGATCTCGCTGCCGACCGAGGAGCCTTTATCGATCAATCGCAATCCCTCAATA 27622 Query 20721 TCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACA 20780 || |||| || || ||| |||| | || ||||| | ||||| ||| | | Sbjct 27623 TCCACATGACCAACCCTTCGATGGGTCAGCTCACGTCGATGCACTTCTACGGTTGGAAGA 27682 Query 20781 AGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGA 20818 | || |||||||| ||||||||||| |||| |||||| Sbjct 27683 AAGGACTCAAGACCGGCATGTACTACTTGCGAACCCGA 27720 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | ||||||||||||| ||||| ||||| ||| ||| || || Sbjct 25834 CCTCAGCACATGATCATGCGAGTCGCCGTCGGTATCCACGGCCGAGACGTCGAAAAGGTT 25893 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||||| |||| ||| | || | ||| || ||||| |||||||| | ||| Sbjct 25894 ATTGAGACATATAACCTCATGTCCGAGCGATACTTTACCCACGCCTCGCCGACCTTGTTC 25953 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||||||| |||| ||| |||| || ||| | || || |||||||| ||| Sbjct 25954 AACGCCGGTACGCCTCACCCTCAGTTGTCTTCGTGCTTCTTGGTCGCAATGAAGGACGAC 26013 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAG 19312 |||||||| |||||||| || |||||| Sbjct 26014 TCGATTGAGGGAATCTACGACACCCTCAAG 26043 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 || |||||||| ||||||||||| |||||||| || |||||||| ||||| | |||||| Sbjct 27719 CGGGTTCGCAAGTAGTACATGCCGGTCTTGAGTCCTTTCTTCCAACCGTAGAAGTGCATC 27660 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCG 78306 || |||| ||| ||||| |||| ||| ||||| || || || || ||| Sbjct 27659 GACGTGAGCTGACCCATCGAAGGGTTGGTCATGTGGATATTGAGGGATTGCGATTGATCG 27600 Query 78307 ATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATG 78366 || | || || |||||||| || | ||||||| ||| || || ||||| | Sbjct 27599 ATAAAGGCTCCTCGGTCGGCAGCGAGATCGATGATACCCTTCTGGCTGATTTCCCAAACA 27540 Query 78367 GTCCGGTAAATGGCCTTCAGCTCT 78390 ||| ||| || ||||||| |||| Sbjct 27539 GTCTTGTAGATAGCCTTCAACTCT 27516 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 19490 TCGTTCGC--CATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGC 19547 || ||||| |||||||||||| || ||||||||||| ||| | || ||| |||| || | Sbjct 26273 TCTTTCGCAGCATCTACCTCGAACCCTGGCACGCGGATGTCTTCGACTTCATCGATCTTC 26332 Query 19548 GCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTC 19607 | |||||| || | || || | || || ||||| ||| || | ||||| | Sbjct 26333 GAAAGAACCACGGCAAGGAAGAAGTCCGAGCCCGAGACCTGTTCTACGCGCTCTGGATCC 26392 Query 19608 CGGACCTATTCATGGAGAAG-GTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCAC 19666 | ||| | ||||| | || | || ||| ||||| || ||| |||||||||| || Sbjct 26393 CCGACATGTTCAT-GCGACGTGTCGAGGCGGACGGCGACTGGGCGTTGATGTGCCCCAAC 26451 Query 19667 GAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC 19717 || || || || || |||| ||| ||||| |||| ||| | || || ||| Sbjct 26452 GAGTGTCCGGGTCTGTCCGAAGTCCACGGCAAGGCTTTCGACGAATTATAC 26502 >seq190 Length=239985 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || ||||||||||| ||||| || ||||||||||| |||| ||||||||||| || || Sbjct 13042 ATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCGGGACTGACGTTCTCCAACGAACTCATC 12983 Query 60099 TCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131 ||||| |||||||| ||||| || |||||| Sbjct 12982 TCCCGAGACGAGGGACTCCACACCGACTTTGCA 12950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522489339280