Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq129 145 8e-30 seq118 123 3e-23 >seq129 Length=301134 Score = 145 bits (160), Expect = 8e-30 Identities = 265/384 (69%), Gaps = 8/384 (2%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACG---GTGACGACTACACGCGT 53236 |||||| | | ||||||| |||||| | |||||||||| | |||| | | | | Sbjct 25834 CCTCAGCACATGATCATGCGAGTCGCCGTCGGTATCCACGGCCGAGACGTCGAAAAG--- 25890 Query 53237 GTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296 || |||||| || || | ||| | | |||||||| |||||| |||| ||| || Sbjct 25891 GTTATTGAGACATATAACCTCATGTCCGAGCGATACTTTACCCACGCCTCGCCGACCTTG 25950 Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356 |||||||| |||||| |||||||||| |||| |||||| |||| || |||||||| Sbjct 25951 TTCAACGCCGGTACGCCTCACCCTCAGTTGTCTTCGTGCTTCTTGGTCGCAATGAAGGAC 26010 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 |||||||| || || |||||||| || |||||| |||||| |||||||| || Sbjct 26011 GACTCGATTGAGGGAATCTACGACACCCTCAAGACTTGTGCCATGATCTCCAAAACTGCG 26070 Query 53417 GGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 || ||||| || | || | | | ||| |||| || || || | || || || Sbjct 26071 GGCGGTATTGGATTGAACATTCAC-AACATCCGAGCCAAGGGATCGTACATTGCCGGAAC 26129 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 ||||| | | |||| ||||| || ||||| || | | | | || || || || Sbjct 26130 CAACGGGTACTCGAATGGTATCGTCCCCATGCTTCGAGCTTACGATGCGACTGCTCGATA 26189 Query 53536 CGTCAACCAGGGTGGTGGGAAGCG 53559 |||| ||||||| ||| ||||| Sbjct 26190 CGTCGACCAGGGAGGTAACAAGCG 26213 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 |||| || ||| ||| || ||||| || |||||| || | || || | ||| Sbjct 27523 AAGGCTATCTACAAGACTGTTTGGGAAATCAGCCAGAAGGGTATCATCGATCTCGCTGCC 27582 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA 55849 || || || || | ||||| || || || || || || ||| |||| || ||||| Sbjct 27583 GACCGAGGAGCCTTTATCGATCAATCGCAATCCCTCAATATCCACATGACCAACCCTTCG 27642 Query 55850 CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATG 55909 ||| || | | ||||||||||| ||||| |||||||| ||||||||||| || ||| Sbjct 27643 ATGGGTCAGCTCACGTCGATGCACTTCTACGGTTGGAAGAAAGGACTCAAGACCGGCATG 27702 Query 55910 TACTATCTGCGGACCCG 55926 ||||| |||| ||||| Sbjct 27703 TACTACTTGCGAACCCG 27719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 53567 TCGTTCGC--CATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 || ||||| |||||||||||| || |||||||| || | | || || |||| || | Sbjct 26273 TCTTTCGCAGCATCTACCTCGAACCCTGGCACGCGGATGTCTTCGACTTCATCGATCTTC 26332 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATT 53683 | ||| || || | ||||| | || ||| |||||||| ||| || || ||||| Sbjct 26333 GAAAGAACCACGGCAAGGAAGAAGTCCGAGCCCGAGACCTGTTCTAC-GCGCTCTGGATC 26391 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||| | ||||||| | || ||| ||||| || ||| |||||||||| ||| Sbjct 26392 CCCGACATGTTCATGCGACGTGTCGAGGCGGACGGCGACTGGGCGTTGATGTGCCCCAAC 26451 Query 53744 GAGTGCCCCGGCCT 53757 ||||| || || || Sbjct 26452 GAGTGTCCGGGTCT 26465 >seq118 Length=311515 Score = 123 bits (136), Expect = 3e-23 Identities = 294/433 (68%), Gaps = 16/433 (4%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || |||||||| || || ||||||| ||||| | | || ||||| || | ||| | Sbjct 31136 CCGGTTCCGATGCCGTCCGCACCATCGATCAGCACAAGAGGAACGACCGGCAGGTAATAT 31077 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTC--CGTGACGTACTTGAGCACCGCATTGTCACTCG 117269 || || || | | || | |||| || | || ||||||||| | | || || | | Sbjct 31076 TCCGGTTCGATCCCCATATCGTCTTCGACCTG--GTACTTGAGGATGGGATCATCGTTGG 31019 Query 117270 GATCGAATATGTTCTTG-GTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCA 117328 ||| ||| | || || | ||| ||| | |||||||||||||||| || || Sbjct 31018 GATGGAAAA-GTGCTCGAGTCATTCGTGGGATATTGGTGAAAATGTAACGAGCACTGGCC 30960 Query 117329 GCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGG 117388 ||||| || || ||||| | ||||||||||||||| ||| | ||| | ||||| | | Sbjct 30959 GCATCTTTACCTCCAGCGATACGCGTACCGAATTGACCATTGGGCGAGAGAAGGTTGATG 30900 Query 117389 TTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTG--GAG-GCTCGCC 117445 || ||| ||| |||||||| || || | |||||| || | || || | | | Sbjct 30899 TTATTGCTGCCGACAAAGTTCTGGGCGAGACCGACAATTGT--CATGACCAGCGATTG-T 30843 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 ||||| || || || ||||||| || | |||||| ||||| || || || ||||| || Sbjct 30842 TCACCGTGATGGTAAGCCGTCTTTTCAGACACGTAACCCGCAAGTTGGGCGACCTTGATT 30783 Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563 || ||||| || || |||| || || | | ||||| || |||| ||||||| Sbjct 30782 TCCTTGACG--AGCTTTCGTTTGAAACAACCAAACAAGACCTTTCGTTGACCAGGCTTCA 30725 Query 117564 GACCATCCGCCAC 117576 |||||||| || Sbjct 30724 ACCCATCCGCGAC 30712 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | ||||||||||| || || || || | ||||| || || || Sbjct 30983 GTGAAAATGTAACGAGCACTGGCCGCATCTTTACCTCCAGCGATACGCGTACCGAATTGA 30924 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| ||| ||||||| ||| ||| ||| || || ||||| || | | ||| Sbjct 30923 CCATTGGGCGAGAGAAGGTTGATGTTATTGCTGCCGACAAAGTTCTGGGCGAGACCGACA 30864 Query 152149 A---TCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || || || || || | ||||||||| || || ||||||| || | | ||| Sbjct 30863 ATTGTCATGACCAGC-GATT--GTTCACCGTGATGGTAAGCCGTCTTTTCAGACACGTAA 30807 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCC 152232 ||||| | || || ||||| || ||| Sbjct 30806 CCCGCAAGTTGGGCGACCTTGATTTCC 30780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213694852600