Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq107 150 2e-31 seq129 109 6e-19 seq159 105 8e-18 seq118 95.1 1e-14 seq288 86.0 7e-12 >seq107 Length=1016152 Score = 150 bits (166), Expect = 2e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 27422 AGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATT 27481 |||| |||||||| ||||| || ||||| ||||| || || || | || | ||| Sbjct 88470 AGACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCTTCCGACACTATCGACAATG 88529 Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 | ||| | || || ||||||||||||||||||||||| || ||||| || | || || | Sbjct 88530 TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGATCTTCG 88589 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 |||| ||||| ||||| |||| ||| || || | || || || |||| |||||||||| Sbjct 88590 CTGGAAAGCAGCTCGAAGATGGTCGAACACTCTCGGATTACAACATCCAGAAGGAATCCA 88649 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || |||||||| || || ||||| Sbjct 88650 CGCTTCACCTCGTCTTGCGGCTGCGGGGTGG 88680 Score = 140 bits (154), Expect = 4e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| || || | || || ||||| || Sbjct 88682 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCGAGT 88741 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| || ||||||||||||||||| |||||||| |||||| Sbjct 88742 GATACAATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGGATTCCTCCTGACCAG 88801 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| || || || | || || || | ||||| || Sbjct 88802 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 88861 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | |||||||| || ||||| || || ||| Sbjct 88862 ATTCAAAAGGAGTCGACTCTGCACCTGGTC 88891 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| |||||||| ||||| || || || || ||||| || Sbjct 88910 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 88969 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| |||| | || || ||||| |||||||| || || || |||||| Sbjct 88970 GACACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCAG 89029 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || ||||| ||||| ||||| |||| || ||||| | ||||| || Sbjct 89030 CAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAAC 89089 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| | || | ||| |||| | || ||||| Sbjct 89090 ATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGG 89136 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| |||||| | ||||| ||||| || || ||||| || ||||| Sbjct 89138 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 89197 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || |||||||||||||| || || || || || ||| Sbjct 89198 GACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGATCAG 89257 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || || || ||||| | ||||| | ||| ||| | | || || || Sbjct 89258 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 89317 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || | || ||||| | || ||||| Sbjct 89318 ATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGG 89364 >seq129 Length=301134 Score = 109 bits (120), Expect = 6e-19 Identities = 226/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 || ||||||||| |||| | || |||||| || ||||| | | ||||||| | Sbjct 26618 GCATCCTTGTAGAGCATGAATGGTCCACCGGTTTCAGTCTGTGCATCCATGATGGCGAAC 26559 Query 81082 CAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAA 81141 |||| || ||||||||| ||| | ||| |||||||| | ||||| |||| Sbjct 26558 CAAAGCTTTTGCGCCTTGATGACCCTCTTGAACTTGCCTTCACGTTCGTACTTTTCGTAT 26499 Query 81142 GCTTCGTCGAA---CTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCAC 81198 ||||||||| |||| ||||| | ||| | || | || |||||||| |||||| Sbjct 26498 AATTCGTCGAAAGCCTTG---CCGTGGACTTCGGACAGACCCGGACACTCGTTGGGGCAC 26442 Query 81199 ATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGG 81258 |||| ||||||| ||| ||| ||| |||||| ||| ||||||||||| Sbjct 26441 ATCAACGCCCAGTCGCCGTCCGCCTCGACACGTCGCATGAACATGTCGGGGATCCAGAGC 26382 Query 81259 GCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGA 81318 ||| ||||||||| ||| || | || || | || ||||| || | |||| Sbjct 26381 GCGTAGAACAGGTCTCGGGCTCGGACTTCTTCCTTGCCGTGGTTCTTTCGAAGATCGATG 26322 Query 81319 AAGTCCATGATGTCCGCATGCCATGGCTCCAGATA 81353 ||||| | || ||||| ||||| || || || || Sbjct 26321 AAGTCGAAGACATCCGCGTGCCAGGGTTCGAGGTA 26287 >seq159 Length=269225 Score = 105 bits (116), Expect = 8e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || || || ||||| ||||| || | ||| | || | ||| Sbjct 15458 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 15517 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || ||||||||||| || || || || ||||||||||| | || || || || Sbjct 15518 TCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGATTGATCTTCGCCGGC 15577 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| ||||| |||| || ||||| | ||||| || |||| ||||| ||||| | Sbjct 15578 AAGCAGCTCGAAGATGGCCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCTTG 15637 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | |||||| | || || ||||| Sbjct 15638 CACTTGGTCTTGAGGCTCCGAGGTGG 15663 >seq118 Length=311515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 237/358 (66%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || || ||||| || || || |||| |||||| | || | ||||| || || ||||| Sbjct 30781 GAAATCAAGGTCGCCCAACTTGCGGGTTACGTGTCTGAAAAGACGGCTTACCATCACGGT 30840 Query 32107 GAGGCGTCGCTC--CAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATA 32164 || ||||| || | || |||||| || || |||||||||||||| |||| Sbjct 30841 GAACAATCGCTGGTCATGACA--ATTGTCGGTCTCGCCCAGAACTTTGTCGGCAGCAATA 30898 Query 32165 ACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATG 32224 || | ||| | ||| ||| ||| || || || || || |||| || || || |||| Sbjct 30899 ACATCAACCTTCTCTCGCCCAATGGTCAATTCGGTACGCGTATCGCTGGAGGTAAAGATG 30958 Query 32225 CTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACC 32284 | || || | |||||||| |||||| | || ||| ||| || ||||| | | Sbjct 30959 CGGCCAGTGCTCGTTACATTTTCACCAATATCCCACGAATGACTCGAGCACTTTTCCATC 31018 Query 32285 CGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGT 32344 | || ||| | | ||||||||| | | || |||| | | || |||| |||| | Sbjct 31019 CCAACGATGATCCCATCCTCAAGTACCAGGTCGAAGACGATATGGGGATCGAACCGGAAT 31078 Query 32345 TCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 ||| ||||| |||| | | || | | ||||| || ||||||||||| || Sbjct 31079 ATTACCTGCCGGTCGTTCCTCTTGTGCTGATCGATGGTGCGGACGGCATCGGAACCGG 31136 >seq288 Length=125410 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| |||||||| || || || || ||||||||||| | || || || || ||||| Sbjct 9723 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 9782 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 ||||| |||| || ||| | | ||||| || |||| ||||| || ||| | || | Sbjct 9783 CTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 9842 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 |||||||| | || ||||| Sbjct 9843 GTCTTGCGATTGCGAGGTGG 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307997567440