Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq24 109 4e-19 >seq24 Length=437227 Score = 109 bits (120), Expect = 4e-19 Identities = 237/349 (68%), Gaps = 12/349 (3%) Strand=Plus/Minus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 |||| || ||||| |||| || ||||| ||||| || ||||||||| |||| || Sbjct 155424 CTTTCGGATTCCATGCGCTCATAATGATCCGCCTATCCGTCGGGTTGTTCTTGATCTTGT 155365 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTG 30232 | | | | ||||||||| || ||| |||| || || || | || ||| || Sbjct 155364 CAATCACTTGCGCCAGCTGATCGACGCCCTGTCCCGTATAATCATCCTCGCACGTCT-TG 155306 Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 ||||| || ||||||||||||||||| || || || |||||||||| ||| | ||||| Sbjct 155305 TACTCGGCGCCGAAATGCCTCCACTGAAATCCATAGACCGGTCCCAAGTCAC---CTTCC 155249 Query 30293 CT---GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30349 || ||| | | || |||||| | | || || || ||||| || ||||||| Sbjct 155248 CTTCGGTGTCCCAGTCCGACCTTGTCGAGGTACTCCCTTGATCCGTTTCCGGCCCAGATA 155189 Query 30350 TTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30409 | | |||| || | ||| || || || || || | ||||||||| || ||| Sbjct 155188 TGAATATCCTTTTCCGCGAGAAGCTTTCCGTCGGTTGAGCCGCGGACGAACCAGAGTAGC 155129 Query 30410 TCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGG 30456 || || |||||| | | || ||||| | ||| || || ||||| || Sbjct 155128 TCTTCGACGACG--CCGCGAAGGAAGACTCGCTTCGTAGTTAGGAGCGG 155082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308731207004