Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq107 163 2e-35 seq288 109 5e-19 >seq107 Length=1016152 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||||| ||| | || || |||||||| || | || Sbjct 89138 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 89197 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| |||||||| || |||||||| Sbjct 89198 GACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGATCAG 89257 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | |||||| || || ||||| ||| || ||| | || ||||||||| Sbjct 89258 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 89317 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || ||||||||||| ||||| ||||| || Sbjct 89318 ATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGGTAT 89367 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| ||| | || || || ||||| ||| | || Sbjct 88910 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 88969 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || || || || || || || || || || Sbjct 88970 GACACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCAG 89029 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || || || | ||||| | ||| ||||||| |||||| Sbjct 89030 CAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAAC 89089 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||||| || ||||| |||| ||||||||||| || Sbjct 89090 ATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGGTAT 89139 Score = 109 bits (120), Expect = 5e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 27006 ACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTC 27065 ||| ||||||||||| | || ||| | ||||| ||| |||| ||| ||||||| | ||| Sbjct 89444 ACTTTGACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACGTC 89503 Query 27066 AAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCC 27125 || || ||||||||||| |||||||| || ||||| || || || || || | ||| Sbjct 89504 AAGTCGAAGATTCAAGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTTGCC 89563 Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 || || || |||||||| | |||| | || ||||||| Sbjct 89564 GGAAAGCAGTTGGAAGATGGCAGGACCTTGTCTGATTACA 89603 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27006 ACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTC 27065 ||||| ||||| ||| | || ||||| || || ||| | |||||| | || || | ||| Sbjct 88472 ACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCTTCCGACACTATCGACAATGTC 88531 Query 27066 AAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCC 27125 || || || || ||||| || || || || || ||||| || || || || | ||| Sbjct 88532 AAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGATCTTCGCT 88591 Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185 || || || | ||||| || || | || ||||||||||| || ||||| || || Sbjct 88592 GGAAAGCAGCTCGAAGATGGTCGAACACTCTCGGATTACAACATCCAGAAGGAATCCACG 88651 Query 27186 TTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | || ||||| |||||||||| || Sbjct 88652 CTTCACCTCGTCTTGCGGCTGCGGGGTGGTAT 88683 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| ||| | || || | ||||| || || Sbjct 88682 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCGAGT 88741 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || ||||| ||||| || || || || || || || Sbjct 88742 GATACAATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGGATTCCTCCTGACCAG 88801 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || ||||| || |||||||| | || | ||||| |||||| Sbjct 88802 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 88861 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||||||||||||||| Sbjct 88862 ATTCAAAAGGAGTCGAC 88878 >seq288 Length=125410 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||||||||| ||||| || || || || || ||||| || || | ||||||||| || Sbjct 9723 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 9782 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | ||||| | ||| | ||||| |||||||| || ||||||||||| || || ||| Sbjct 9783 CTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 9842 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||||| || Sbjct 9843 GTCTTGCGATTGCGAGGTGGTAT 9865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916567906240