Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq107 102 6e-17 seq288 84.2 2e-11 >seq107 Length=1016152 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | ||| || ||||||||||| || || |||||||| || ||||| Sbjct 89231 GACAAGGAAGGCATCCCGCCCGATCAGCAACGGTTGATCTTCGCCGGAAAGCAGTTGGAG 89290 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| || | |||||| ||||||||||| || || ||| || |||| ||||||||| Sbjct 89291 GACGGTCGAACCTTGTCGGATTACAACATTCAGAAGGAGTCTACCCTGCACTTGGTTTTG 89350 Query 28003 CGTTTGCGTGGCGG 28016 || ||||| || || Sbjct 89351 CGATTGCGAGGTGG 89364 >seq288 Length=125410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || ||||| || || || || ||||| || || | || Sbjct 9729 GACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAA 9788 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||||||||| ||||||||||| || ||| |||||||| ||||| ||| Sbjct 9789 GATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTCTTG 9848 Query 28003 CGTTTGCGTGGCGG 28016 || ||||| || || Sbjct 9849 CGATTGCGAGGTGG 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860938406399