Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq107 185 2e-41 seq159 172 1e-37 seq288 95.1 3e-14 >seq107 Length=1016152 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | ||||| || || |||||||| || || | |||||| | ||||||| Sbjct 89121 AGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCT 89062 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||||| |||||||| || | || ||||| ||| Sbjct 89061 TCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCC 89002 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || ||||||||||| ||| |||||| ||||| ||||| ||| Sbjct 89001 TGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTC 88942 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || |||||||| || || | |||||| Sbjct 88941 TTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 Score = 179 bits (198), Expect = 9e-40 Identities = 156/194 (80%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| |||||||| ||||| || || |||||||| ||||||| || || | |||||||| Sbjct 88663 GACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAGAGTGTTCGACCATCTTC 88604 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 |||||||| || |||||||| | ||||| || |||||||||| ||| ||||||||||| Sbjct 88603 GAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCCTCCTTGTCCTG 88544 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || || || ||||| ||||| || ||| |||||||||||||| ||||| Sbjct 88543 GATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTCGACCTCGAGAGTGATGGTCTT 88484 Query 211085 TCCCGTGAGAGTCT 211098 ||| || ||||||| Sbjct 88483 TCCGGTAAGAGTCT 88470 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || ||||| ||||| ||||| ||||| ||||| ||||| || || | || || Sbjct 88902 CGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTT 88843 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||||||||||||| || ||||| | || || ||||||||||||| || Sbjct 88842 CGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCC 88783 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || ||||| || ||| || || || | Sbjct 88782 TCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATTGTATCACTCGACTCGACTTCCAAG 88723 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || | ||||| || || | |||||| Sbjct 88722 GTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || || ||||| ||||||| | ||| | || || |||| ||| Sbjct 89341 GTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCCAACTG 89282 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | ||||| || || || || | |||||||||||||| ||||| Sbjct 89281 CTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGAATCTT 89222 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| ||||| ||||| ||| || || || || |||||||||||||| || Sbjct 89221 GGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTTCCGGT 89162 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | ||||| Sbjct 89161 CAACGTCTTCACAAAGATTTGCAT 89138 Score = 109 bits (120), Expect = 1e-18 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 ||||| | | |||||| |||||||||| |||||| || || ||||| | ||||| ||| Sbjct 89601 TAATCAGACAAGGTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGG 89542 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || |||| ||||||||||| || ||||| || ||||| || || ||||| || Sbjct 89541 TCGGGCGGAATGCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAC 89482 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCT 211098 ||| || || | |||||| ||||| || || | ||||| Sbjct 89481 GATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGTCT 89442 >seq159 Length=269225 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || | ||| | ||| | |||||||| || |||||||| || |||| |||||| Sbjct 15657 CGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTT 15598 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| ||||||||||| |||||||| | || || |||||||| || | ||| Sbjct 15597 CGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCT 15538 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| ||| || |||||||| Sbjct 15537 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGG 15478 Query 211074 GTGATCGTCTTTCCCGTGAG 211093 ||||| ||||| |||||||| Sbjct 15477 GTGATGGTCTTACCCGTGAG 15458 >seq288 Length=125410 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| | ||| ||||| || |||||||| || || | | ||| | |||||||| Sbjct 9845 GACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGGCCATCTTC 9786 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||||| |||||||| | || || |||||||| || | ||||||||||| || Sbjct 9785 GAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTGTCTTG 9726 Query 211025 GATCT 211029 |||| Sbjct 9725 AATCT 9721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146994999005