Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq107 107 1e-18 >seq107 Length=1016152 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || ||||| || ||||| ||||||||||| ||| || Sbjct 88910 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 88969 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || || || || || ||| | ||||| || || Sbjct 88970 GACACCATCGACAATGTGAAATC-CAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCA 89028 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || || || || || || || ||||| | ||| || | ||| ||||| Sbjct 89029 GCAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAA 89088 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || ||||| || || || || | | ||||| || || Sbjct 89089 CATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGG 89136 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || ||||| |||||||| || ||||| || ||| || Sbjct 89138 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 89197 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || ||| ||||| ||||| | ||||| ||||| Sbjct 89198 GACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGATCAG 89257 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || ||||| || || |||| |||| || || || ||||||||| Sbjct 89258 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 89317 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | || || ||||| | |||||||| || Sbjct 89318 ATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGG 89364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008211731196