Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq107 156 1e-32 seq159 131 4e-25 seq288 111 4e-19 >seq107 Length=1016152 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 || |||||| | ||| | |||||||| || |||| ||||| |||| | |||| || Sbjct 89125 TCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCC 89066 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| ||||||||||| | |||||| ||||| ||||| ||||| ||||| Sbjct 89065 ATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTT 89006 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 || |||||||| |||||| ||||||||||| |||| ||| || || | ||||| Sbjct 89005 ATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGAT 88946 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | ||| || | ||| | ||||| Sbjct 88945 TGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| ||||| || |||||||| || |||| |||||||| | | ||| Sbjct 88674 CGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAGAGTGTT 88615 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||||||||| | |||||| || || || ||||| || Sbjct 88614 CGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATTCCC 88555 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| ||| ||||| ||||| || | ||| || || | Sbjct 88554 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTCGACCTCGAGA 88495 Query 225673 GTGATCGTCTTGCCCGTCAAAGT 225695 ||||| ||||| || || | ||| Sbjct 88494 GTGATGGTCTTTCCGGTAAGAGT 88472 Score = 136 bits (150), Expect = 9e-27 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 225536 TGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595 ||||||| | ||| || || |||||||| | |||||| || || ||||| | |||||| | Sbjct 89603 TGTAATCAGACAAGGTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCT 89544 Query 225596 GGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTG 225655 ||||||||||||| |||||||||||||| ||||| ||| || || || ||||| | Sbjct 89543 GGTCGGGCGGAATGCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATCGTGTCCG 89484 Query 225656 AGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 | | ||| || || || ||||| |||||||| |||||||| Sbjct 89483 ACGATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGT 89444 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || || || || || | |||||||| | ||| |||| || || || | ||| Sbjct 89341 GTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCCAACTG 89282 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| | ||||| || |||||||| || ||||||||||| || ||||| Sbjct 89281 CTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGAATCTT 89222 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||||| ||||| |||| || || || | ||||||||||| || || Sbjct 89221 GGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTTCCGGT 89162 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||| || || | || | |||||| Sbjct 89161 CAACGTCTTCACAAAGATTTGCAT 89138 >seq159 Length=269225 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || |||| ||| | ||| | ||||| || || |||| ||||| || | | ||| Sbjct 15657 CGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTT 15598 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| || |||||||| | ||| || ||||| ||||| || ||| Sbjct 15597 CGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCT 15538 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| || ||||||||||| |||| || || || | Sbjct 15537 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGG 15478 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 15477 GTGATGGTCTTACCCGT 15461 >seq288 Length=125410 Score = 111 bits (122), Expect = 4e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 || || ||| | ||| | ||| || || || |||| ||||| |||| ||| |||| || Sbjct 9851 TCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGGCC 9792 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| || |||||||| | ||| || ||||| || || ||||||||||| Sbjct 9791 ATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTT 9732 Query 225618 GTCTTGGATCT 225628 |||||| |||| Sbjct 9731 GTCTTGAATCT 9721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526050873878