Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq24 104 2e-17 >seq24 Length=437227 Score = 104 bits (114), Expect = 2e-17 Identities = 236/349 (68%), Gaps = 12/349 (3%) Strand=Plus/Minus Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 27439 |||| || ||||| |||| || ||||| ||||| || ||||||||| |||| || Sbjct 155424 CTTTCGGATTCCATGCGCTCATAATGATCCGCCTATCCGTCGGGTTGTTCTTGATCTTGT 155365 Query 27440 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACC-CTCATGTCCGTG 27498 | | | | ||||||||| || ||| |||| || || || | || ||| || Sbjct 155364 CAATCACTTGCGCCAGCTGATCGACGCCCTGTCCCGTATAATCATCCTCGCACGTCT-TG 155306 Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558 ||||| || |||||||||||||| || || || || |||||||||| ||| | ||||| Sbjct 155305 TACTCGGCGCCGAAATGCCTCCACTGAAATCCATAGACCGGTCCCAAGTCAC---CTTCC 155249 Query 27559 CT---GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 27615 || ||| | | || |||||| | | || || || ||||| || ||||||| Sbjct 155248 CTTCGGTGTCCCAGTCCGACCTTGTCGAGGTACTCCCTTGATCCGTTTCCGGCCCAGATA 155189 Query 27616 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 27675 | | |||| || | ||| || || || || || | ||||||||| || ||| Sbjct 155188 TGAATATCCTTTTCCGCGAGAAGCTTTCCGTCGGTTGAGCCGCGGACGAACCAGAGTAGC 155129 Query 27676 TCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGG 27722 || || |||||| | | || ||||| | ||| || || ||||| || Sbjct 155128 TCTTCGACGACG--CCGCGAAGGAAGACTCGCTTCGTAGTTAGGAGCGG 155082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505682364647