Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq107 100 7e-16 seq288 89.7 1e-12 seq159 87.8 4e-12 >seq107 Length=1016152 Score = 100 bits (110), Expect = 7e-16 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || || ||||||||||| | || |||| || || || | Sbjct 89344 CAAG-TGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCCA 89286 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| ||||||||||| | || ||||| || | || ||| |||||||| || || Sbjct 89285 ACTGCTTT--CCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTGTCCTG 89228 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || ||||| | || | |||| || ||| |||||||| || || || || Sbjct 89227 AATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTT 89168 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||||| |||| ||||| Sbjct 89167 TCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 || || || || ||||||||||| |||| | |||| |||||||| || ||||| | Sbjct 89106 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTT--C 89049 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | |||||||| | | |||||||| | || ||| || ||||| || || || || || Sbjct 89048 CAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCCTGGATCTTGGATT 88989 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 | ||| | || | | |||| || || ||||| || || || || || || || |||| Sbjct 88988 TCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAG 88929 Query 152086 TCTTCACGAAGACCTGCAT 152104 |||| ||||| | |||||| Sbjct 88928 TCTTGACGAAAATCTGCAT 88910 >seq288 Length=125410 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||| || ||||||||||| |||| || |||| |||||||| | Sbjct 9842 CAAG-TGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGGCCATCTTCGA 9784 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| | | ||||||||| | | ||| |||||||| ||||||| Sbjct 9783 GCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTGTCTTGAA 9724 Query 152017 T 152017 | Sbjct 9723 T 9723 >seq159 Length=269225 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || ||||||||||| || | | |||| |||||||| || || ||| Sbjct 15633 GTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCATCTTCGAGCTGCTTGCCG 15574 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | | ||||||||| | || ||| |||||||| || || || || ||| Sbjct 15573 GCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTG 15514 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAG 152083 || | || | | |||| || ||| || || || || || || || |||||||| Sbjct 15513 ACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAG 15458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815818018127