Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq107 187 5e-42 seq159 152 1e-31 seq288 96.9 7e-15 seq190 87.8 4e-12 >seq107 Length=1016152 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| || || |||| || || ||| ||| || |||||||||||||| | Sbjct 89137 ACCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGA 89078 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || || || || || || |||||||| ||||| |||||| ||| Sbjct 89077 AAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGG 89018 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || |||||||| | ||| || | ||||| |||||||| | ||| || Sbjct 89017 GATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAAC 88958 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 88957 TTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || | || || || | |||| ||| || ||||||||||| || | Sbjct 88681 ACCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGA 88622 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || || || || || || |||||||| ||||| || ||| || Sbjct 88621 GAGTGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGG 88562 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||||||||| |||| |||||| Sbjct 88561 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTCGAC 88502 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 ||||||||||| ||||| || || | ||||| Sbjct 88501 CTCGAGAGTGATGGTCTTTCCGGTAAGAGTCT 88470 Score = 136 bits (150), Expect = 8e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || ||||| | || ||||| || | || || ||||| ||||||||||| | Sbjct 88909 ACCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGA 88850 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| || || || || || || ||||||||||| || || |||||| || Sbjct 88849 GAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGG 88790 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| ||||||||||| || ||| ||||| || || | ||||| || || | |||| Sbjct 88789 AATCCCCTCCTTGTCCTGAATC-TTGCTCTTGACATTGTCGATTGTATCACTCGACTCGA 88731 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 88730 CTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Score = 136 bits (150), Expect = 8e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || || || |||||||| || | |||| || || || ||||| | || || ||||| || Sbjct 89328 TCCTTCTGAATGTTGTAATCCGACAAG-GTTCGACCGTCCTCCAACTGCTTTCCGGCGAA 89270 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| ||||| || || ||| || || |||||||| || ||||| | || ||| | Sbjct 89269 GATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTT 89210 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 |||||||||||||| | |||||||| || ||||||||||| || ||||| ||||| || Sbjct 89209 GTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCAC 89150 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 89149 AAAGATTTGCAT 89138 Score = 134 bits (148), Expect = 3e-26 Identities = 129/163 (79%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 282922 TGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGT 282980 |||| |||| |||| || | |||||| || | || || |||||||||||||| ||||| Sbjct 89603 TGTAATCAGACAAG-GTCCTGCCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGC 89545 Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 ||||| |||||| || ||||||||||| ||||| | || ||| | || || |||||| Sbjct 89544 TGGTCGGGCGGAATGCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATCGTGTCC 89485 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 || | ||||||||| | |||||| ||||| || |||||||||| Sbjct 89484 GACGATTCGACTTCCAAAGTGATGGTCTTGCCGGTCAAAGTCT 89442 >seq159 Length=269225 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || | | |||| || || ||| || || |||||||||||||| | Sbjct 15664 ACCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGA 15605 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || || || || ||||| |||||||| || || |||||| ||| Sbjct 15604 AAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGG 15545 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 15544 GATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 15485 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||||||||| Sbjct 15484 CTCGAGGGTGATGGTCTTACCCGT 15461 >seq288 Length=125410 Score = 96.9 bits (106), Expect = 7e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||| |||| || | |||| || || || || || |||||||||||||| | Sbjct 9863 ACCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 9804 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || |||||||| || || || || ||||| |||||||| || || |||||| | Sbjct 9803 CAAG-GTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGG 9745 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTG 283017 | ||||| ||||||||||| |||| || Sbjct 9744 GGATACCTTCCTTGTCTTGAATCTGTG 9718 >seq190 Length=239985 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 230226 ATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTC 230285 ||||||||||| | | |||||| | || || || ||||| || |||||| | || Sbjct 12832 ATCGGCATGAACGAAAAGCTCATGTGCCAGTACATTCGGTTCGTCGCCGATCGTCTGCTC 12773 Query 230286 GTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTC 230345 || || || || |||| || ||||| ||| | ||||| |||| |||||||| | Sbjct 12772 GTCGCCCTTGGAAACGACAAGGTGTACAACGATACCAACCCGTTCGACTTTATGGAAAAC 12713 Query 230346 ATTTCACTCCAGGGGAAAACTAACTTCTTCGA--AAAGCGTGTCAGC 230390 ||||| |||||||| ||| | ||||| ||||| | ||||||| || Sbjct 12712 ATTTCGCTCCAGGGTAAAGCCAACTTTTTCGAGTCACGCGTGTCGGC 12666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734680376398