Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq107 131 1e-25 seq159 107 1e-18 seq288 84.2 2e-11 >seq107 Length=1016152 Score = 131 bits (144), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| || | |||||||| || || ||||||||| |||||||| || Sbjct 88912 CATACCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTC 88853 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || |||| ||||||||||| || ||||||||||| |||||||| || | Sbjct 88852 GGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGG 88793 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 ||| | || ||||| ||| ||||| ||| || ||| | || || || || Sbjct 88792 AGGAATCCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGT--CGATTGTATCACTCGAC 88735 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || |||||||| || | |||||| |||||||| ||||| Sbjct 88734 TCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || || ||| |||| ||| || || |||||| || ||||||||||| Sbjct 89368 CATACCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATC 89309 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || |||| |||| |||||| ||||| |||||||| || |||||||| | Sbjct 89308 CGACAAGGTT-CGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGG 89250 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||| | | | || ||||| | ||| | Sbjct 89249 GCGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACT 89190 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || ||||||||||| || | |||||||| ||||||||||| Sbjct 89189 CGACTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 125 bits (138), Expect = 5e-24 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | ||| || |||||||||||| ||||| |||||||||||||| Sbjct 88684 CATACCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATC 88625 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | |||| || | || || |||||||| || || |||||||| || |||||||| | Sbjct 88624 CGAGAGTGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGG 88565 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 ||| | || ||||| ||| ||||| ||| || ||| | || ||||||| ||| Sbjct 88564 AGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATAGTGTCGGAAGAT 88507 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCT 44321 || ||||| | || || |||||||| || || |||| Sbjct 88506 TCGACCTCGAGAGTGATGGTCTTTCCGGTAAGAGTCT 88470 Score = 107 bits (118), Expect = 1e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || || || |||| ||| | ||| ||||| ||||||||||| Sbjct 89143 TTGCATACCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTA 89084 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| || || | || || |||||||| || || |||||||| || ||||| || Sbjct 89083 GTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTC 89024 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | ||| ||||| ||| ||||| |||| | | |||||||| | ||| Sbjct 89023 AGGCGGGATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGA 88964 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || |||||||| || || ||||| ||||| || ||||| Sbjct 88963 TTCAACTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 >seq159 Length=269225 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| || ||||| |||| ||| | ||| |||||| ||||||||||| || | Sbjct 15663 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 15604 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || || |||||||| ||||| |||||||| |||||||| || | || Sbjct 15603 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGGG 15544 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||| | | | |||||||| | ||| || ||| Sbjct 15543 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 15484 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || || ||||| ||||||||| Sbjct 15483 TCGAGGGTGATGGTCTTACCCGTGAGG 15457 >seq288 Length=125410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || |||| || || ||| |||| ||| | || |||||| ||||||||||| ||| Sbjct 9865 ATACCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCG 9806 Query 44168 G-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | || | || | || || |||||||| ||||| |||||||| |||||||| || | Sbjct 9805 GACAAGGT-TCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGG 9747 Query 44227 AGGCACACCTTCCTTTTC 44244 || | ||||||||| || Sbjct 9746 GGGGATACCTTCCTTGTC 9729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988921451929