Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq107 178 3e-39 seq159 159 8e-34 seq288 100 7e-16 >seq107 Length=1016152 Score = 178 bits (196), Expect = 3e-39 Identities = 163/205 (80%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || ||||| || ||||||||||| || ||| ||| ||| Sbjct 88913 CAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCGGAC 88972 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| ||||| ||||| || || || ||||| || ||||||||| Sbjct 88973 ACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCAGCAA 89032 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| ||||| ||||||||||||||| | || ||| |||| || ||| || Sbjct 89033 CGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATC 89092 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || |||| |||| Sbjct 89093 CAGAAGGAATCCACCTTGCA-CTTG 89116 Score = 154 bits (170), Expect = 4e-32 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 ||||| || ||||| || ||||| |||||||| ||| || ||||| ||||| || ||| Sbjct 88472 ACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCTTCCGACACTATCGACAATGTC 88531 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||||| |||||||| || ||||| ||||| || ||||||||| | |||||||| Sbjct 88532 AAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGATCTTCGCT 88591 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 ||||| |||||||||||||| | || || | ||||| ||| |||| || ||||| || Sbjct 88592 GGAAAGCAGCTCGAAGATGGTCGAACACTCTCGGATTACAACATCCAGAAGGAATCCACG 88651 Query 178119 CTGCATCTTGTTTTG 178133 || || || || ||| Sbjct 88652 CTTCACCTCGTCTTG 88666 Score = 145 bits (160), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || ||||| ||||||||||| || || || ||| ||| Sbjct 89141 CAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCGGAC 89200 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| ||||| ||||| || || |||||| Sbjct 89201 ACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGATCAGCAA 89260 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||||||||| ||| | || || || | || |||| | ||||| ||| | Sbjct 89261 CGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAAC-CTTGTCGGATTACAACAT 89319 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || || || || ||||| | |||||| || Sbjct 89320 TCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGA 89353 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| || |||||| | || || || || Sbjct 88685 CAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCGAGTGAT 88744 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || || ||||| |||||||| Sbjct 88745 ACAATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGGATTCCTCCTGACCAGCAG 88804 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || || ||||| ||||| || | ||||| |||| || ||| | Sbjct 88805 CGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAACATT 88864 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || ||||| || || Sbjct 88865 CAAAAGGAGTCGACTCTGCACCTGGT 88890 Score = 109 bits (120), Expect = 1e-18 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 ||| | || || || || ||||| | || || ||| || ||||| || || |||||| Sbjct 89444 ACTTTGACCGGCAAGACCATCACTTTGGAAGTCGAATCGTCGGACACGATTGACAACGTC 89503 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || |||||||| ||||| ||||| || || || |||||||||||| | ||||| ||| Sbjct 89504 AAGTCGAAGATTCAAGACAAGGAAGGCATTCCGCCCGACCAGCAACGATTGATCTTTGCC 89563 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTA 178096 ||||| ||| | |||||||| ||||| |||| | ||||| Sbjct 89564 GGAAAGCAGTTGGAAGATGGCAGGAC-CTTGTCTGATTA 89601 >seq159 Length=269225 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||||||||| || ||| ||||||||||| |||||||| Sbjct 15458 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 15517 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| ||||| ||||| || |||||||| ||| | ||||||||||| Sbjct 15518 TCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGATTGATCTTCGCCGGC 15577 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || |||||||||||||| | || ||| | || || ||| |||| || || || || || Sbjct 15578 AAGCAGCTCGAAGATGGCCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCTTG 15637 Query 178122 CATCTTGTTTTGAGACTCAGA 178142 || | || ||||| ||| || Sbjct 15638 CACTTGGTCTTGAGGCTCCGA 15658 >seq288 Length=125410 Score = 100 bits (110), Expect = 7e-16 Identities = 99/124 (80%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 ||||||| ||||| ||||| ||||| || |||||||| ||| | ||||||||||| || | Sbjct 9721 AGATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGC 9780 Query 178066 AGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||||||||||| | || |||| |||| || ||| |||| || || || || |||| Sbjct 9781 AGCTCGAAGATGGCCGAAC-CTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCA- 9838 Query 178125 CTTG 178128 |||| Sbjct 9839 CTTG 9842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726002514378