Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq107 123 2e-23 seq159 104 2e-17 seq288 89.7 5e-13 >seq107 Length=1016152 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || |||||| |||||||| ||||||||||| || || |||| || Sbjct 88890 ACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCC 88831 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || |||| ||||| ||||| | |||| | |||||||||| Sbjct 88830 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGA 88771 Query 41774 ATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || || ||| || | || | || || |||||||| || |||| || || || | Sbjct 88770 ATCTTGCTCTTGACATTGTCG--ATTGTATCACTCGACTCGACTTCCAAGGTGATTGTCT 88713 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || |||| ||||| ||||| |||||||| Sbjct 88712 TTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || || |||| ||||| || ||||||||||||||| || || || | ||| || || Sbjct 89352 CGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCG 89293 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || || | |||||| |||||||| |||| || || || || | || | || |||||| Sbjct 89292 TCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTG 89233 Query 41768 TCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 ||| ||| | || | | ||| | | | |||||| ||||| || || | || || Sbjct 89232 TCC-TGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGAT 89174 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || || |||| |||||| || || || ||||| Sbjct 89173 CGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || || || || || |||||| |||||||| ||||| || || ||| Sbjct 88680 CCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGAG 88621 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || ||||| |||| || || || || | ||| Sbjct 88620 AGTGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 88561 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||| || | || | ||||||| || || | Sbjct 88560 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATAGTGTCGGAAGATTCGA 88503 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 |||| | || || || || || || || |||| | ||| Sbjct 88502 CCTCGAGAGTGATGGTCTTTCCGGTAAGAGTCTGTTCGA 88464 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| |||| ||| |||||||| ||||| |||||||| ||||| || | || ||| Sbjct 89118 ACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCG 89059 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || ||||| |||| || || ||||| | || | | |||||| ||| || Sbjct 89058 AGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGGATACCCTCCTTATCC-TG 89000 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || | || || | | | ||||| || || || || | || || || || Sbjct 88999 GATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACTTCGAGGGTGATTGTCTT 88940 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| |||||||||||||| Sbjct 88939 TCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 >seq159 Length=269225 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || | || |||| |||| ||| ||||||||| ||||| ||||| Sbjct 15667 ACCACCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTC 15608 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || ||||| || | || |||||||||||||||||||| |||| ||||| ||||| | Sbjct 15607 CGAAAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGG 15548 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 || | || ||||||||| ||| || ||| ||| | | | ||||| |||| Sbjct 15547 CGGGATGCCTTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCCGAGGACT 15489 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 | ||||| | || || || |||||||| || Sbjct 15488 CGACCTCGAGGGTGATGGTCTTACCCGTGAG 15458 >seq288 Length=125410 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || || |||| |||| || ||||||||| ||||| |||||||| | ||| || | Sbjct 9850 CGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGGCCA 9791 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || |||||||||||||||||||| |||| ||||| ||||| | ||| | | |||||| Sbjct 9790 TCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTG 9731 Query 41768 TC 41769 || Sbjct 9730 TC 9729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302052544400