Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq18 107 2e-18 >seq18 Length=491663 Score = 107 bits (118), Expect = 2e-18 Identities = 210/309 (68%), Gaps = 6/309 (2%) Strand=Plus/Minus Query 145963 GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAA 146022 ||||| ||||||||| | |||| | | ||||| || |||||||| ||| ||| Sbjct 181891 GGGTTGTTCTTGATCTTGTCAATCACTTGCGCCAGCTGATCGACGCCCTGTCCCGTATAA 181832 Query 146023 TCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGC 146082 || || | | | |||| |||| ||||| ||||||||||| || || ||||| || Sbjct 181831 TCATCCTCGCACGTCTTGTACTCGGCGCCGAAATGCCTCCACTGAAATCCATAGACCGGT 181772 Query 146083 CCCAGGTCCCCGGGCTCCCT---GTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGAC 146139 |||| ||| || |||||| ||| ||||| ||| || | ||||| | |||| || Sbjct 181771 CCCAAGTCACC---CTCCCTTCGGTGTCCCAGTCCGACCTTGTCGAGGTACTCCCTTGAT 181715 Query 146140 CCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCC 146199 ||||| || ||||||| | | || | | | ||| || ||| || || || Sbjct 181714 CCGTTTCCGGCCCAGATATGAATATCCTTTTCCGCGAGAAGCTTTCCGTCGGTCGAGCCG 181655 Query 146200 CTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGC 146259 | || ||||||||| |||||||||| ||| || | |||||| | || || || || Sbjct 181654 CGGACGAACCAGAGTAGCTCTTCGACGACGCCGCGAAGGAAGACTCGTTTCGTAGTTAGG 181595 Query 146260 AGGGGGAAC 146268 || || ||| Sbjct 181594 AGCGGTAAC 181586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 |||||| | ||| || ||||||||||||| | || || || || || |||| | | Sbjct 182272 CAGCTGAACCTTGAGCGGCTCCACGTGGTCCCGATATACATGAGCATCACCCATCTGGAG 182213 Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 ||| || || ||||| |||| | ||||| ||||| ||||| |||||||| Sbjct 182212 GATAAATTCGTGCGGCTCCGTATCCGTCATCAAGGCGATCATGTGTGTCAGGAGGGAGTA 182153 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 | || |||||||| || || || || || | ||| | |||||| ||||||| |||| Sbjct 182152 GGACGCGATGTTGAATGGGACGCCGAGGCCGAGGTCGCACGAGCGTTGGTACATGAGGCA 182093 Query 145851 GGAGAG 145856 |||||| Sbjct 182092 GGAGAG 182087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076254178960