Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq21 116 4e-21 seq2 113 5e-20 seq15 105 7e-18 seq4 95.1 1e-14 >seq21 Length=401567 Score = 116 bits (128), Expect = 4e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 |||||||| || ||||||||| |||| ||||| || | |||| | | | |||| |||| Sbjct 241997 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAA 241939 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| || |||||||| | |||||||| ||| | |||| ||| || Sbjct 241938 GTCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGATTGATCTTCGCCGG 241879 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || || | || ||||| ||||||||||| ||||||||| |||| | Sbjct 241878 CAAGCAGCTCGAAGATGGCCGAACCCTTTCGGACTACAACATTCAGAAGGAGTCCACCTT 241819 Query 40890 GCA 40892 ||| Sbjct 241818 GCA 241816 >seq2 Length=1446810 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| |||| || ||| || | Sbjct 440230 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 440289 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || || || | || || ||||| ||||| | |||||| Sbjct 440290 GACACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCAG 440349 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| ||| || || ||||| || || | || ||||| |||||||||| Sbjct 440350 CAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAAC 440409 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| |||| | || |||| ||| |||| || Sbjct 440410 ATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGG 440456 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 ||| | | || || || || || |||||||| |||| |||||| || | |||| | Sbjct 439784 TCGAACAGACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCCTCGGACACTATCG 439843 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || || | ||||| ||||| || || | || ||||||||| | | Sbjct 439844 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGA 439903 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || || ||||| || || | || |||||| || |||||||||||||||| Sbjct 439904 TCTTCGCTGGAAAGCAGCTCGAAGATGGTCGAACCCTCTCGGATTACAACATCCAGAAGG 439963 Query 40880 AGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | ||||||| || || || ||||| || |||| || Sbjct 439964 AATCCACGCTTCACCTCGTCTTGCGGCTGCGGGGTGG 440000 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || ||| | || || || || |||||| | || ||||| || | Sbjct 440458 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 440517 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| || |||||||| | |||||| Sbjct 440518 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGACCAG 440577 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| || || ||| |||| |||| || ||| | || |||||| Sbjct 440578 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 440637 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| | || ||||| | || ||||| ||| | || || Sbjct 440638 ATTCAGAAGGAGTCTACCCTGCACTTGGTTTTGCGATTGCGAGGTGG 440684 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || |||||| | || ||||| | | Sbjct 440002 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCAAGT 440061 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || || | ||||| ||||| || || | |||||| Sbjct 440062 GATACAATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGGATTCCTCCTGACCAG 440121 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| || ||||| |||||||| |||| || || ||| |||||||||| Sbjct 440122 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 440181 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || |||||| | || ||||| || || Sbjct 440182 ATTCAAAAGGAGTCGACTCTGCACCTGGT 440210 >seq15 Length=506865 Score = 105 bits (116), Expect = 7e-18 Identities = 226/332 (68%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 117093 CCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCA 117152 |||| || ||||||||||| || || ||||||||||| ||||| ||| |||||| |||| Sbjct 482777 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGACTGACGTTCTCCAACGAACTCA 482836 Query 117153 TCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGC 117212 ||||| | ||||||||||| || ||||||||| || | || |||| || || | Sbjct 482837 TCTCCCGAGACGAGGGTCTCCACACCGACTTTGCATGCCTCCTCTTCACCCACCTGAAAC 482896 Query 117213 AGCGACCGAGCGCGGCGCGCGTCAGGGA--GATCGTCACCGACGCGGTCGCCATCGAGCA 117270 |||||| | ||| ||| || | ||| || || || |||| | |||| Sbjct 482897 GACGACCGCACCCGGAAACCGT--GGAACGCATCATCCGTGAAGCCGTCGACCTCGAATG 482954 Query 117271 GCGCTTCCTCACCGAAGCGCTGCCGGT-GCGTCTGCTGGGACTCAATTGCGAAACG---A 117326 ||||| || || || ||||| || ||| || | || | || ||||| | | Sbjct 482955 TGAATTCCTGACGGACGCCCTGCCCGTCTCGT-TGATCGGCATGAA---CGAAAAGCTCA 483010 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 ||| || ||||| |||||||||||| | ||||| ||| || | || |||| Sbjct 483011 TGTGCCAGTACATTCGGTTCGTCGCCGATCGTCTGCTCGTCGCCCTTGGAAACGACAAGG 483070 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATG 117418 |||||| |||||||| | ||||||||| Sbjct 483071 TGTACAACGATACCAACCCGTTCGACTTTATG 483102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 116779 CGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGA 116838 |||||| ||||||||||| || || |||||||| ||| | || || || ||||| Sbjct 482351 CGACGGTATCGTCAACGAAAACCTCGTCGAGCGATTCTCGTCCGAAGTTCAATGCGCCGA 482410 Query 116839 GGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTC 116898 || || ||||||||| || || ||| ||||||||| | |||||||||| || || Sbjct 482411 AGCCAAGTTCTTCTACGGTTTCCAAATCATGATGGAGAACATTCACTCGGAAACCTACTC 482470 Query 116899 GACCCTCATCGACACGTAC 116917 | | | |||||||| ||| Sbjct 482471 GCTCTTGATCGACACCTAC 482489 >seq4 Length=1260884 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 |||| ||||| || || |||||| | |||||||| ||| | |||| ||| ||||| ||| Sbjct 784574 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 784633 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 || || || | || ||| | |||||||||||||||||||||| | || |||| | Sbjct 784634 CTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 784693 Query 40897 GTGTTGCGCTTGAGGGGCGG 40916 || ||||| ||| | || || Sbjct 784694 GTCTTGCGATTGCGAGGTGG 784713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218723422240