Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq15 132 4e-26 seq2 129 5e-25 seq21 98.7 9e-16 >seq15 Length=506865 Score = 132 bits (146), Expect = 4e-26 Identities = 247/353 (70%), Gaps = 15/353 (4%) Strand=Plus/Plus Query 44942 ATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAAC 45001 ||||||||||||||||| ||||||| | || || ||||||| ||||| |||||| || Sbjct 482806 ATGCCCGGACTGACGTTCTCCAACGAACTCATCTCCCGAGACGAGGGTCTCCACACCGAC 482865 Query 45002 TTTGCCTGCCTCTACTATAAT-ACGAGAGTCGATCAAAAGTTGGACGCGCCCACCGTC-A 45059 ||||| |||||| || | || || ||| | | || || ||||| | Sbjct 482866 TTTGCATGCCTCCTCTTCACCCACCTGAAACGACGACC----GCACCCGGAAACCGTGGA 482921 Query 45060 ACGACATGTTCTCCGAAGCCGTGGCCATCGAGATG-GAATTTTTTGCTGAGGCTCTGCCC 45118 ||| ||| || |||||||| | | |||| ||| ||||| | | || || |||||| Sbjct 482922 ACG-CATCATCCGTGAAGCCGTCGACCTCGA-ATGTGAATTCCTGACGGACGCCCTGCCC 482979 Query 45119 GAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGAT 45178 | |||||| | || ||||||| || | ||| | |||||||| ||| ||||||||| Sbjct 482980 GTCTCGTTGATCGGCATGAACGAAAAGCTCATGTGCCAGTACATTCGGTTCGTCGCCGAT 483039 Query 45179 CGTCTTCTCGTC-CAGTT--AAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAG 45235 ||||| |||||| | || ||| | |||| ||||| | | ||||| ||||| Sbjct 483040 CGTCTGCTCGTCGCCCTTGGAAACGA---CAAGGTGTACAACGATACCAACCCGTTCGAC 483096 Query 45236 TTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGT 45288 |||||| | || |||||| | |||| ||| | || ||||| ||| |||||| Sbjct 483097 TTTATGGAAAACATTTCGCTCCAGGGTAAAGCCAACTTTTTCGAGTCACGCGT 483149 >seq2 Length=1446810 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || |||| ||| |||||||| | |||||||| || |||||||||||||| Sbjct 440686 TACCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCG 440627 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||||| | ||| ||||| ||| |||| | || ||||| ||||| | Sbjct 440626 ACAAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGGTCGGGCG 440567 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| ||| || || || | |||| ||||||| | ||||| Sbjct 440566 GGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGA 440507 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||| || ||||||| || || ||||| || ||||| Sbjct 440506 CTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 440458 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || |||| || |||||||| | || || || || || |||||||| ||| Sbjct 440458 TACCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGG 440399 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| |||||||| ||||||||| |||| | || ||||| || || | Sbjct 440398 AAAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCG 440339 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||| || || || ||| || | |||| |||||||| | || | Sbjct 440338 GGATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAA 440279 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| ||| | || || ||||| ||||| || || ||||||||||| Sbjct 440278 CTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 440230 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| || | ||| | || || || || || ||||||||||| Sbjct 440002 TACCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCG 439943 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| |||||||| ||||||||| |||| | || |||||||| |||| Sbjct 439942 AGAGGGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAG 439883 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | |||| ||||||| | |||| Sbjct 439882 GAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGATTCGA 439823 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 |||||| || | || || ||||| ||||| Sbjct 439822 CCTCGAGAGTGATGGTCTTTCCGGTAAGAGT 439792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || | |||| ||| | || ||||| |||||||||||||| ||| Sbjct 440230 TACCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGG 440171 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || || || ||||| || ||||| |||| | |||||||| || |||| Sbjct 440170 AGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAG 440111 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | |||| || || | ||||| Sbjct 440110 GAATCCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATTGTATCACTTGACTCGA 440051 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || || ||||||| || || || || |||||||| Sbjct 440050 CTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 440002 >seq21 Length=401567 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| |||||||| | || ||||| || ||||||||||| || Sbjct 241791 ACCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCCGA 241850 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || || ||| |||||||| || || ||| |||| | |||||||| || || || Sbjct 241851 AAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGG 241910 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||| |||||||| || || || || | |||| |||||||| | |||||| Sbjct 241911 GATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 241970 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||||| ||| | || || || || || Sbjct 241971 CTCGAGGGTGATGGTCTTACCCGTGAG 241997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830008739208