Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001599735.1_202016-03-01] 74 sequences; 20,697,359 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq22 158 1e-33 seq2 107 2e-18 >seq22 Length=364263 Score = 158 bits (174), Expect = 1e-33 Identities = 273/397 (69%), Gaps = 0/397 (0%) Strand=Plus/Minus Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || |||| ||| || || ||||| |||||||| || || || | ||| Sbjct 67487 GCGAAAGCACCGGGTCGCTTGTTACCTCCCTGGTCGACGTATCGAGCAGTCGCATCGTAA 67428 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 ||| ||||| || |||| ||| || || ||| || || | ||| || Sbjct 67427 GCTCGAAGCATGGGGACGATACCATTCGAGTACCCGTTGGTTCCGGCAATGTACGATCCC 67368 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 || ||||| | |||||||| || || || || || || | | ||| || ||||| || Sbjct 67367 TTGGCTCGGATGTTGTGAATGTTCAATCCAATACCGCCCGCAGTTTTGGAGATCATGGCA 67308 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 || || || ||||||||||| ||||| || ||| || || | ||||||||||| Sbjct 67307 CAAGTCTTGAGGGTGTCGTAGATTCCCTCAATCGAGTCGTCCTTCATTGCGACCAAGAAG 67248 Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776 |||||||||| || | | |||||| |||| ||||| ||||| |||||| ||| Sbjct 67247 CACGAAGACAACTGAGGGTGAGGCGTACCGGCGTTGAACAAGGTCGGCGAGGCGTGGGTA 67188 Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836 ||||||| | ||||| || || || || || || | || | ||| ||||| Sbjct 67187 AAGTATCGCTCGGACATGAGGTTATATGTCTCAATAACCTTTTCGACGTCTCGGCCGTGG 67128 Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTC 23873 ||||||| |||||| ||||| ||||||| ||||||| Sbjct 67127 ATACCGACGGCGACTCGCATGATCATGTGCTGAGGTC 67091 Score = 109 bits (120), Expect = 5e-19 Identities = 389/595 (65%), Gaps = 21/595 (4%) Strand=Plus/Minus Query 22134 CGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAA 22193 |||||||| ||| || | || |||||||| ||||| || || ||||||| |||| | Sbjct 68986 CGGCCGGTCGGGTTCGCAAGTAGTACATGCCGGTCTTGAGTCCTTTCTTCCAACCGTAGA 68927 Query 22194 AATGTATCGACGTCAATTTTCC-ATAACTCGGCAAGTCCATGTACACATTGAACGACTGA 22252 | || |||||||| | | || || || ||| |||| | ||||| || || Sbjct 68926 AGTGCATCGACGTGAGCTGACCCATCGAAGGGTTGGTC-ATGTGGATATTGAGGGATTGC 68868 Query 22253 CTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATC-GAC-- 22309 ||||||||||| |||||||| ||||| || | || || | ||| | || | | Sbjct 68867 GATTGATCGATAAAGGCTCCTCGGTCGGCAGCGAGATCGATGA---TACCCTTCTGGCTG 68811 Query 22310 ATTTCCCATACGGTCTTGTACAGTTGCCTG-ATCTCTAACGGTATCGATTCGA-TCCTCT 22367 |||||||| || |||||||| | | |||| | |||| || || | | || | | | Sbjct 68810 ATTTCCCAAACAGTCTTGTAGA-TAGCCTTCAACTCTGCAGGAAT-GTTGGGAATGTTTT 68753 Query 22368 GGACGGACCCGTTATTGTGT---ATGATCAAATTTTTAATCGTATCGTTCCACAAACCGA 22424 ||| ||| || | |||| ||||| || || ||| |||| ||| | ||| | Sbjct 68752 GGATGGAGCC---ACCGTGTGCGATGATTCGGTTCTTCATCTCGTCGTCCCAGAGACCCA 68696 Query 22425 TGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGC 22484 | | ||| || | || || || || || || || |||| | || | Sbjct 68695 GGTTGACCAAGTCACGCAACAACCAGGGGCAGACGACCTGGAAATCACCGGCGAGCACAC 68636 Query 22485 GGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAG 22544 | || |||||||||| ||| ||||||||||| |||| || ||||| || || | Sbjct 68635 GTCGGGAGTAAATGTTGCTGGTGTACGGTTCGAAACATTCGTTCCAGCCCAGAATTTGTG 68576 Query 22545 CGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAA 22604 ||| || || |||||||| || || | ||| |||||||| | | ||| ||| | | Sbjct 68575 AGGTGGATGCAGTCGGCATGGGAGCGACCAGGAGCGAGTTGCGTAGGCCAGTCTTGGCGA 68516 Query 22605 TTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATAT 22664 | || ||| | | | ||| ||||| || ||||| || | || |||| | | Sbjct 68515 TCTTGGCCTTCAAGGTTGCCCAATCCCAGAGGGGCGACGGGGT---AATGCCCCAAAGGT 68459 Query 22665 CGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACC 22719 |||| |||||| ||| |||| |||||| ||||||||| || | ||| || || Sbjct 68458 CGTACTGCAACTTGCCTTGACTGGCCGGGGAGCCTTCGTAGGTCTGGTAAGGGCC 68404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || |||| ||| || | || || ||||| || ||||||||||| || ||||| || Sbjct 67676 TCGACACGTCGCATGAACATGTCGGGGATCCAGAGCGCGTAGAACAGGTCTCGGGCTCGG 67617 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 || || || |||||| ||||||| | ||| | ||||| || || ||||| ||||| Sbjct 67616 ACTTCTTCCTTGCCGTGGTTCTTTCGAAGATCGATGAAGTCGAAGACATCCGCGTGCCAG 67557 Query 23462 GGCTCGAGGTA 23472 || |||||||| Sbjct 67556 GGTTCGAGGTA 67546 >seq2 Length=1446810 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || ||||||||| | || || || | || Sbjct 440458 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 440517 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || ||||||||||||| | |||||||||||| Sbjct 440518 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGACCAG 440577 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || ||||| || || |||||||| ||| | || || ||||| ||| Sbjct 440578 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 440637 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || || || || |||| Sbjct 440638 ATTCAGAAGGAGTCTACCCTGCACTTGGT 440666 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || | Sbjct 440002 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCAAGT 440061 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 || | |||| | ||||| ||| || | | ||||||||| || | || || ||| Sbjct 440062 GATACAATCGACAATGTCAA---GAGCAAGATCCAGGACAAGGAGGGGATTCCTCCTGAC 440118 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || || |||||||| ||| |||||||| ||| | ||| || Sbjct 440119 CAGCAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTAC 440178 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || |||||||| || ||||| || || ||| | || |||| Sbjct 440179 AACATTCAAAAGGAGTCGACTCTGCACCTGGTCCTCAGGCTGCGAGGAGGTA 440230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765987666080